Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02536 ATGAAGCTTTATCTGAGAAGCATAGGAAAAAAGAGCTCATCGAGCATATACAAAGGTGTTCGATATAGGAAATGGGGGAAATGGGCTTCTGAGATTCGTGACCCTTTTAAAGGGGTCAGAATATGGCTTGGTACCTATGATAATGAACTTGAGGCTGCTATTGCTTATAGCAAAAAGAAAAAAGAGTTTGAGGACAAATTACAAGAACATAACACAAACAATCCTAATTTGAAGGATAGCAAACAAGGTTTGATTTGA 258 0.3682 MKLYLRSIGKKSSSSIYKGVRYRKWGKWASEIRDPFKGVRIWLGTYDNELEAAIAYSKKKKEFEDKLQEHNTNNPNLKDSKQGLI. 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02536 85 ProSiteProfiles AP2/ERF domain profile. 16 75 IPR001471 GO:0003700|GO:0006355
Seca1g02536 85 SUPERFAMILY DNA-binding domain 15 68 IPR016177 GO:0003677
Seca1g02536 85 CDD AP2 17 56 IPR001471 GO:0003700|GO:0006355
Seca1g02536 85 MobiDBLite consensus disorder prediction 65 85 - -
Seca1g02536 85 SMART rav1_2 16 81 IPR001471 GO:0003700|GO:0006355
Seca1g02536 85 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Seca1g02536 85 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Seca1g02536 85 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Seca1g02536 85 Coils Coil 53 80 - -
Seca1g02536 85 PANTHER DNA-BINDING DOMAIN 12 66 IPR044808 GO:0003700|GO:0009873
Seca1g02536 85 Pfam AP2 domain 16 62 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02536 Seca-Chr1 65378538 65378795 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02536 7 61 AP2-EREBP Transcription Factor Family AT1G72360 61.818 4.27e-18 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca1g02536 AP2 4.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02536 - - zju:107409444 88.9669