Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02518 ATGGCTAGCCAACAATCTTTGTTAGACAAGCCCAGAAATTCCCTTTCCAAAACTTTCTGGTTAATCCTCTCTTTAGTTGCTATCATAAGCTCCTCAGCTCTTATTGCTTCTTATTTCTTCAATCCCACCTCCTTCTTCAACCTCTCCTCACCTTCCCATGTTTGTGAACATGCACTTGACACAAAATCCTGCTTAGCTCATGTCTCAGAGGTAGCACAAGGTCCAATCTTGGCCACCACAAAAAACCCCAAATTGAATTTACTCATATCTCTATTAACCAAATCCACACCTCACATTCAAAATGCTATGGACACAGTCAAAGCTATCAAACTACGGATTAACAATCCCAAAGAGGAAGTAGCTTTGCACGACTGTGAAAAACTAATGGATTTGTCCGTAGACAGAGTATGGGACTCAGTGGTGGCTCTAACAAAAAATACCATTGATTCTCAACAAGATGCACACTCATGGCTAAGTAGTGTACTCACTAACCATGCAACTTGCTTGGATGGATTAGAAGGTCCATCACGGGCACTTATGGAGGCTGAGCTTGAGGACTTGGTATCTAGAGCCAGAACTTCTCTGGCTATGCTTGTTGCTGTTTTGCCCCCAAAAGGTGAGCAATTCATTGATGAGTCACTAAATGGGGATTTTCCCTCGTGGGTGACAAGCAAGGATCGGAGGCTTCTAGAATCTTCTGTTAGGGACATAAAAGCTAATGTTGTGGTGGCTAAGGATGGGAGTGGAAAGTTCAAGACTGTGGCTGAGGCTATTGCATCGGCACCTGACAATGGTAAGACAAGGTATGTGATCTATGTGAAAAAGGGAACTTACAAAGAGAATGTCGAAATTGGTAAGAAGAAAACGAATGTGATGCTCGTGGGTGATGGTATGGATGCAACTGTCATCACCGGCAGCTTGAATGTTATCGATGGATCTACCACCTTCAACAGTGCCACTGTTGCCGCTGTGGGCGATGGATTTATAGCTCAAGACATTTGGTTCCAAAACACAGCAGGCCCACAGAAACACCAAGCAGTGGCTCTACGTGTCGGTGCTGACCAATCCGTTATAAACCGGTGTCGTATTGACGCCTACCAAGACACTCTCTATGCTCACACCAATAGGCAGTTCTATCGTGACTCCATAATTACTGGTACCGTTGACTTCATCTTTGGAAACGCAGCCGTTGTGTTCCAGAAGTGCCAGCTGGTGGCCCGAAAGCCCATGAGTAACCAAAACAACATGGTCACGGCCCAAGGAAGAGAAGACCCAAACCAAAACACAGGAACTTCAATTCAGCAATGTAATTTAACACCAAGCTCAGATCTTAAGCCCGTTGCGGGTTCCATCAAAACTTTTCTGGGCCGCCCATGGAAGAAGTACTCTAGAACAGTTGTGATGCAATCCTCCGTGGATAGCCATATTGACCCAACAGGATGGGCAGAATGGGATGCCTCCAGTAAGGACTTTTTGCAAACGTTGTATTATGGAGAGTACATGAACACTGGACCAGGTGCTGGTACCAGTAAGAGAGTGAACTGGCCTGGATACCATATCATCACAAGTGCAACTGAGGCTAGCAAGTTTACAGTAACACAGCTCATCCAAGGCAATGTTTGGTTGAAGAACACGGGGGTGAACTACATTGAGGGCCTCTAG 1662 0.4537 MASQQSLLDKPRNSLSKTFWLILSLVAIISSSALIASYFFNPTSFFNLSSPSHVCEHALDTKSCLAHVSEVAQGPILATTKNPKLNLLISLLTKSTPHIQNAMDTVKAIKLRINNPKEEVALHDCEKLMDLSVDRVWDSVVALTKNTIDSQQDAHSWLSSVLTNHATCLDGLEGPSRALMEAELEDLVSRARTSLAMLVAVLPPKGEQFIDESLNGDFPSWVTSKDRRLLESSVRDIKANVVVAKDGSGKFKTVAEAIASAPDNGKTRYVIYVKKGTYKENVEIGKKKTNVMLVGDGMDATVITGSLNVIDGSTTFNSATVAAVGDGFIAQDIWFQNTAGPQKHQAVALRVGADQSVINRCRIDAYQDTLYAHTNRQFYRDSIITGTVDFIFGNAAVVFQKCQLVARKPMSNQNNMVTAQGREDPNQNTGTSIQQCNLTPSSDLKPVAGSIKTFLGRPWKKYSRTVVMQSSVDSHIDPTGWAEWDASSKDFLQTLYYGEYMNTGPGAGTSKRVNWPGYHIITSATEASKFTVTQLIQGNVWLKNTGVNYIEGL. 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02518 553 CDD PMEI-like_4 57 201 - -
Seca1g02518 553 SUPERFAMILY Pectin lyase-like 238 552 IPR011050 -
Seca1g02518 553 Gene3D - 234 553 IPR012334 -
Seca1g02518 553 Pfam Plant invertase/pectin methylesterase inhibitor 52 189 IPR006501 GO:0004857
Seca1g02518 553 FunFam Pectinesterase 3 52 201 - -
Seca1g02518 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 197 IPR035513 -
Seca1g02518 553 PANTHER PECTINESTERASE 29 543 - -
Seca1g02518 553 FunFam Pectinesterase 234 553 - -
Seca1g02518 553 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Seca1g02518 553 NCBIfam pectinesterase inhibitor domain 51 177 IPR006501 GO:0004857
Seca1g02518 553 Pfam Pectinesterase 240 539 IPR000070 GO:0030599|GO:0042545
Seca1g02518 553 SMART PMEI_2 46 197 IPR006501 GO:0004857
Seca1g02518 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 201 IPR035513 -
Seca1g02518 553 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02518 Seca-Chr1 64392044 64394541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02518 3 553 Carbohydrate Esterase AT1G11580 57.754 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02518 K01051 - gmx:100815836 918.302