Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02517 ATGGCTAGCCAACAATCTTTGTTAGACAAGCCCAGAAATTCCCTTTCCAAAACTTTCTGGTTAATCCTCTCTTTAGTTGCTATCATAAGCTCCTCAGCCCTTATTGCTTCTTATCTCTTCAATCCCACCTCCTTCTTCAACCTCACCTCATCTCCCCATGTCTGTGAGCATGCACTTGACACAAAATCTTGCTTAGCTCATGTCTCAGAGGTAGCACAAGGTCCAATCTTGGCCACCACAAAAGACCACAAATTGAACTTACTTATATCTCTATTGACCAAATCCACACCACAGATTCAAAATGCTATGGACACAGTCAAAGCTATCAAACACAGGATTAACAATCCCAAAGAGGAAGTCGCTTTGCACGACTGTGAGCAACTAATGGACTTGTCAATAGACAGAGTATGGGATTCAGTGGTGGCTCTAACAAAAAATACCATTGATTCTCAACAAGATGCACACTCATGGCTAAGCACTGTGCTCACTAACCATGCAACTTGCTTGGATGGATTAGAAGGTCCCTCTCGAGCCATTATGGAGGCTGAGCTTGAGGACTTGATGTCAAGAGCCAGAACTTCTCTGGCTATGCTTGTTGCTGTTTTGCCTCCAAAGGGTAATGAGCAATTCATTGATGAGTCACTAAATGGGGACTTTCCCTCATGGGTGACAAGCAAAGATCGAAGGCTTTTGGAGTCTTCGGTTAGGGACATAAAAGCCAATGTTGTGGTGGCTAAGGATGGGAGTGGAAAGTTCAAGACTGTGGCTGAGGCTATTGCATCGGCACCCGACAATGGTAAGACAAGGTATGTGATCTATGTGAAAAAGGGAACTTACAAAGAGAATGTCGAAATTGGTAAGAAGAAGACGAATGTGATGCTCGTGGGTGATGGTATGGATGCAACTGTAATCACCGGCAACTTGAATGTCATTGATGGATCTACCACCTTCAAAAGTGCCACTGTTGCTGCTGTGGGAGATGGATTTATAGCCCAAGACATTTGGTTCCAAAACACAGCAGGCCCACAGAAGCACCAGGCAGTGGCTCTCCGTGTTGGCGCCGACCAATCCGTTATAAACCGATGCCGTATGGACGCCTTCCAAGACACTCTCTACGCTCACTCCAACAGGCAGTTCTACCGTGACTCCTTCATTACCGGCACCGTTGACTTCATCTTCGGAAACGCAGCTGTTGTGTTCCAAAAGTGCAAGTTGGTGGCCCGAAAGCCCATGAATAACCAAAAAAACATGGTCACGGCCCAAGGACGAGAAGACCCTAACCAAAACACAGGAACTTCAATCCAGCAATGTGACGTAACACCAAGCTCAGATCTTAAGCCCGTTGTGGGTTCCATCAAAACTTTTCTGGGCCGCCCGTGGAAGATGTTCTCCAGAACAGTAGTGATGCAATCCTTTGTCGACAACCATATTGACCCAACTGGATGGGCTGAATGGGATGCCCAGAGTAAGGACTTTCTGAAAACGTTGTATTATGGAGAGTACATGAACAATGGCCCAGGTGCTGGTACTAGTAAGAGAGTGAATTGGCCTGGTTACCATGTCATCACAAGTGCAGCGGAGGCTAGCAAGTTTACAGTAAAACAACTCATCCAAGGTAATGTTTGGTTGAAGAACACGGGCGTGAACTTCATTGAGGGCCTGTAG 1665 0.4613 MASQQSLLDKPRNSLSKTFWLILSLVAIISSSALIASYLFNPTSFFNLTSSPHVCEHALDTKSCLAHVSEVAQGPILATTKDHKLNLLISLLTKSTPQIQNAMDTVKAIKHRINNPKEEVALHDCEQLMDLSIDRVWDSVVALTKNTIDSQQDAHSWLSTVLTNHATCLDGLEGPSRAIMEAELEDLMSRARTSLAMLVAVLPPKGNEQFIDESLNGDFPSWVTSKDRRLLESSVRDIKANVVVAKDGSGKFKTVAEAIASAPDNGKTRYVIYVKKGTYKENVEIGKKKTNVMLVGDGMDATVITGNLNVIDGSTTFKSATVAAVGDGFIAQDIWFQNTAGPQKHQAVALRVGADQSVINRCRMDAFQDTLYAHSNRQFYRDSFITGTVDFIFGNAAVVFQKCKLVARKPMNNQKNMVTAQGREDPNQNTGTSIQQCDVTPSSDLKPVVGSIKTFLGRPWKMFSRTVVMQSFVDNHIDPTGWAEWDAQSKDFLKTLYYGEYMNNGPGAGTSKRVNWPGYHVITSAAEASKFTVKQLIQGNVWLKNTGVNFIEGL. 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02517 554 Pfam Pectinesterase 241 540 IPR000070 GO:0030599|GO:0042545
Seca1g02517 554 CDD PMEI-like_4 57 201 - -
Seca1g02517 554 ProSitePatterns Pectinesterase signature 1. 266 285 IPR018040 -
Seca1g02517 554 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Seca1g02517 554 SMART PMEI_2 47 197 IPR006501 GO:0004857
Seca1g02517 554 PANTHER PECTINESTERASE 29 544 - -
Seca1g02517 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 197 IPR035513 -
Seca1g02517 554 NCBIfam pectinesterase inhibitor domain 54 179 IPR006501 GO:0004857
Seca1g02517 554 Gene3D - 235 554 IPR012334 -
Seca1g02517 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 201 IPR035513 -
Seca1g02517 554 Pfam Plant invertase/pectin methylesterase inhibitor 54 195 IPR006501 GO:0004857
Seca1g02517 554 FunFam Pectinesterase 235 554 - -
Seca1g02517 554 SUPERFAMILY Pectin lyase-like 239 553 IPR011050 -
Seca1g02517 554 FunFam Pectinesterase 3 52 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02517 Seca-Chr1 64303905 64307036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02517 3 554 Carbohydrate Esterase AT1G11580 57.473 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02517 K01051 - gmx:100815836 911.368