Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02516 ATGGGTGGGAATCAGAAAAGTACAGCTATGGTTAGCCAGGAAAAGAAGAGCCAGGGTGGGTCTATTTGGTCCATTTTCATGCATGCTGATGGCCAAGATTGGTTTCTTATGGTTTTAGGTTTCTTTGGGGCTATTGGTGAAGGCTTGACAACCCCTTTGGTGTTGTATATCAGTAGCCGCATGATGAATAATATTGGGAGTTCATCTACCATGTCAGCAAACACTTTCATCCATAACATCAATAAGAATGCAGTGGCTTGGTTATATTTGGCTGGTGCCTCTTTTATTGTCTGCTTCCTCGAGGGTTATTGTTGGACAAGAACAAGTGGAAGACAAGCTGCCAGAATGAGATGCAGGTATCTGAAAGCAGTGCTAAGACAAGAAGTTGCTTACTTTGATTTGCATGTCACAAGTACGTCAGAGATCATCACTAGTGTCTCCAATGACAGTCTCATAATTCAAGATGTTCTTAGTGAGAAGGTTCCGAATTTCTTGATGAACTTGTCTTTGTTCATTGGGAGCTACATAGCAGCTTTTGCATTCTTGTGGAGATTGGCCATTGTGGGGTTTCCATTTTTGGTTCTTCTGGTGATCCCTGGTTTTATTTATGGCAAGACTTTGATGGGGTTGGCTAGCAAGATCAGAGAAGAGTATAATCAAGCTGGTACAATAGCAGAACAAACAATATCTTCCATCAGAACCGTCTATTCATTTGTTGGGGAAAGCAAGTCCATGATTGCTTTCTCTGATGCTCTACAAGGAACAGTTAAGTTGGGGCTAAAACAAGGCTTAGCTAAAGGCCTAGCCATTGGAAGCAACGGTCTTGTCTTTGCTATATGGTCTTTCATGTGCTATTATGGTAGTAAACTGGTCATGTACCATGGAGCTAAAGGAGGGACAATTTTTGCTGTTGGAGCAGCCATAACTGTTGGTGGATTAGGATTAGGTGCTGGATTATCCAACATGAAGTATTTCTCTGAAGCATGTTCTGCTGGGGAACGTATCAAGGAAGTGATAAAAAGAGTTCCAAAGATTGATTCTGACAAAATGGATGGGGAGATTTTAGATAACGTTTATGGGGAAGTGGAATTTGACCACATAGAATTTGCATACCCATCAAGGCCAGAAAGTGTTATCCTCAATGACTTGTGCCTCAAGATTCCAGCAGGGAAGACAGTGGCATTGGTGGGAGAGAGTGGCTCAGGGAAATCTACAGTGATATCACTTTTGCAGAGATTTTATGACCCACTTGGGGGTGAAATACGTCTTGATGGGGTGGCTATTCATAAGTTGAAGCTCAAGTGGATGAGGTCACAGATGGGGTTAGTGAGCCAAGAGCCTGCTCTGTTCGCAACCAGCATTAAAGAGAACATACTTTTTGGTAAGGAGGATGCAACAGAGGATGAGATAGTTGAGGCTGCAAAAACTTGCAATGCTCATAATTTCATTTCACAGCTTCCTCAGGGTTACCATACACAGGTTGGGGAAAGAGGGATTCAAATATCAGGGGGACAAAAACAGAGGATAGCAATTGCGCGGGCAATAATCAAGAAACCGCGAATCCTTCTTCTCGACGAAGCAACCAGCGCATTGGATTCCGAATCCGAACGACTCGTCCAAGAAGCACTCGACAATGCAACTTCCTCATGCACCGCCATCATCGTCGCTCACCGCTTATCCACCATCCGAAACGCCGACCTCATCGCCGTCATGCGCGGCGGAAAGGTCACGGAGATTGGCTCACACGACGACCTCATCCAAAACGACAATGGCCTCTACGCCTCCCTCGTTCGCCTCCAACAAAACGACAAATCCAAAACACAACCAGAAACCGTTACCACCACCACCAGTACTGATGTCCCTTCCTCGCTGTCCATCACCGACACTCCAAACATGGGCCTGGTGGGCCCTTCCAATTCAGTTGGGGATGATCATCATAACATTGAAGACGACAAGAAGCCGCTGCATGCGGCGTCGTTTAGGAGACTGATGGCAATGAACCTTCCAGAATGGAAGCATGCTGTTTTCGGGTGTTTAAACGCAATGCTATTTGGTGCCGTTCAGCCTGTTTATGCATTCGCGATGGGGTCCATGATATTTGTCTATTTTCATACAGATCATGAGGAGATTAAAAGAAAGACAAGGGTCTATTCTTTATGCTTTTTGGGCCTCTCCGTGATCTCCTTGCTAGTTAATGTTGGCCAGCACTATAGCTTTGGTTACATGGGAGAGTACTTGACTAAAAGGGTCAGAGAGAGCGTGCTTTCTAAGATACTCACTTTTGAAATTGGGTGGTTTGATCAGGACCAAAACTCCAGTGGTGCTATTTGTTCCAGAATTGCCAATGACGCTAATGTGGTGAGGTCTTTAGTGGGAGATAGAATGGCTCTGCTGGTACAAACTTTCTCAGCGGTGATAACAGCCTACACAATGGGCCTAATCATTTCATGGAGGCTTACTATTGTTATGATAGCTGTTCAACCCATTATCGTAGCCTGCTTTTACACAAGGCGTGTGCTTCTCAAGAGCATGTCAAGCAAGGCCATCAAAGCCCAAGAACAAAGTAGCAAGCTAGCTGCTGAAGCTGTTTCTAATCTTCGAACCATCACTGCCTTTTCATCTCAAGACCGAATTATAAAAATGCTTGAAAAAGCCCAAGAGAGCCCAATTCACGAGAATATTCGACAATCATGGTTCGCTGGCATTGGGCTCGGGTTTTCCCAATTCCTCACGTCTTGTACTTGGGCCTTAGACTTTTGGTACGGTGGCAGGCTTATCTCAAATGGCTACATCACAACAAAAGCAATGTTTGAGAGCTTCATGGTTGTGGTGAGCACCGGACGGGTCATTGCAGATGCTGGAAGCATGACCACAGACCTTGCCAAAGGTTCCGATGTTGTGGACTCGGTTTTTGCTATCCTAGATCGGTGCACAAAAATTGAGCCCGATGACCCGAATGGGCTGAAGCCTGAGAATTTAATGGGCCAAATAGATCTCCATGATGTGCATTTTGCATACCCAGCTAGGCCCAATGCGGTTATCTTCCAAGGGTTCTCAATTAAAATAGAAGCGGGGAAATCAACAGCATTGGTGGGACAAAGTGGGTCTGGCAAATCAACCATCATAGGGCTAATAGAGAGATTCTATGACCCAGTGAAAGGAGTAGTGACAATAGATGGTAGGGACATAAAATCATATAACCTTAAGTCACTAAGAAAGCACATAGCACTTGTGAGCCAAGAGCCAACACTGATTGGTGGGACCATAAGAGAGAACATTACATATGGAACGTGTGACAAGATTGATGAGGGTGAGATAATAGAAGCAGCAAAAATAGCCAATGCTCATGATTTCATATGTAGCTTGAACGATGGTTACGAGACATGGTGTGGGGACAAAGGGGTACAACTTTCAGGGGGGCAAAAGCAGAGGATAGCAATAGCGAGGGCCATAGTGAAAAATCCGAAGGTGTTGCTACTAGACGAGGCCACAAGCGCACTAGATAGCCAGTCAGAGAGGGTGGTGCAAGATGCACTGAATAGGGTAATGGTGGGAAGGACCAGTGTGGTTGTGGCACACAGGTTGAGCACCATACACAATTGTGATCTTATTGCTGTGTTAGATAAAGGGAGGATGGTGGAGATTGGAACCCACTCATCTTTGTTGGCCAAAGGACCATGTGGAGCTTATTACTCTTTGGTATGTCTCCAAAGGAGACATGCAGCCACAACCAATGACAATTCTACGTACTAA 3753 0.4506 MGGNQKSTAMVSQEKKSQGGSIWSIFMHADGQDWFLMVLGFFGAIGEGLTTPLVLYISSRMMNNIGSSSTMSANTFIHNINKNAVAWLYLAGASFIVCFLEGYCWTRTSGRQAARMRCRYLKAVLRQEVAYFDLHVTSTSEIITSVSNDSLIIQDVLSEKVPNFLMNLSLFIGSYIAAFAFLWRLAIVGFPFLVLLVIPGFIYGKTLMGLASKIREEYNQAGTIAEQTISSIRTVYSFVGESKSMIAFSDALQGTVKLGLKQGLAKGLAIGSNGLVFAIWSFMCYYGSKLVMYHGAKGGTIFAVGAAITVGGLGLGAGLSNMKYFSEACSAGERIKEVIKRVPKIDSDKMDGEILDNVYGEVEFDHIEFAYPSRPESVILNDLCLKIPAGKTVALVGESGSGKSTVISLLQRFYDPLGGEIRLDGVAIHKLKLKWMRSQMGLVSQEPALFATSIKENILFGKEDATEDEIVEAAKTCNAHNFISQLPQGYHTQVGERGIQISGGQKQRIAIARAIIKKPRILLLDEATSALDSESERLVQEALDNATSSCTAIIVAHRLSTIRNADLIAVMRGGKVTEIGSHDDLIQNDNGLYASLVRLQQNDKSKTQPETVTTTTSTDVPSSLSITDTPNMGLVGPSNSVGDDHHNIEDDKKPLHAASFRRLMAMNLPEWKHAVFGCLNAMLFGAVQPVYAFAMGSMIFVYFHTDHEEIKRKTRVYSLCFLGLSVISLLVNVGQHYSFGYMGEYLTKRVRESVLSKILTFEIGWFDQDQNSSGAICSRIANDANVVRSLVGDRMALLVQTFSAVITAYTMGLIISWRLTIVMIAVQPIIVACFYTRRVLLKSMSSKAIKAQEQSSKLAAEAVSNLRTITAFSSQDRIIKMLEKAQESPIHENIRQSWFAGIGLGFSQFLTSCTWALDFWYGGRLISNGYITTKAMFESFMVVVSTGRVIADAGSMTTDLAKGSDVVDSVFAILDRCTKIEPDDPNGLKPENLMGQIDLHDVHFAYPARPNAVIFQGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPVKGVVTIDGRDIKSYNLKSLRKHIALVSQEPTLIGGTIRENITYGTCDKIDEGEIIEAAKIANAHDFICSLNDGYETWCGDKGVQLSGGQKQRIAIARAIVKNPKVLLLDEATSALDSQSERVVQDALNRVMVGRTSVVVAHRLSTIHNCDLIAVLDKGRMVEIGTHSSLLAKGPCGAYYSLVCLQRRHAATTNDNSTY. 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02516 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 664 980 - -
Seca1g02516 1250 SUPERFAMILY ABC transporter transmembrane region 661 982 IPR036640 GO:0005524|GO:0016020
Seca1g02516 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 335 - -
Seca1g02516 1250 Gene3D - 352 601 IPR027417 -
Seca1g02516 1250 FunFam Putative ABC transporter B family member 8 640 985 - -
Seca1g02516 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 962 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g02516 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1237 IPR027417 -
Seca1g02516 1250 ProSitePatterns ABC transporters family signature. 1137 1151 IPR017871 GO:0005524|GO:0016887
Seca1g02516 1250 Pfam ABC transporter transmembrane region 37 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g02516 1250 Pfam ABC transporter transmembrane region 677 945 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g02516 1250 PANTHER ABC TRANSPORTER B FAMILY 12 733 IPR039421 -
Seca1g02516 1250 MobiDBLite consensus disorder prediction 602 629 - -
Seca1g02516 1250 Gene3D ABC transporter type 1, transmembrane domain 24 964 IPR036640 GO:0005524|GO:0016020
Seca1g02516 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g02516 1250 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Seca1g02516 1250 Pfam ABC transporter 1016 1165 IPR003439 GO:0005524
Seca1g02516 1250 FunFam ABC transporter B family member 4 987 1244 - -
Seca1g02516 1250 FunFam ABC transporter B family member 4 352 608 - -
Seca1g02516 1250 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Seca1g02516 1250 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Seca1g02516 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Seca1g02516 1250 Gene3D - 987 1248 IPR027417 -
Seca1g02516 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 997 1234 IPR003439 GO:0005524
Seca1g02516 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 600 IPR027417 -
Seca1g02516 1250 SUPERFAMILY ABC transporter transmembrane region 31 346 IPR036640 GO:0005524|GO:0016020
Seca1g02516 1250 CDD ABC_MTABC3_MDL1_MDL2 997 1237 - -
Seca1g02516 1250 FunFam ABC transporter B family member 1 24 359 - -
Seca1g02516 1250 SMART AAA_5 1024 1219 IPR003593 GO:0016887
Seca1g02516 1250 SMART AAA_5 389 575 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02516 Seca-Chr1 64118543 64126195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02516 677 1248 Calmodulin-binding Proteins AT2G36910 36.332 3.19e-110 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02516 K05658 - gmx:100809399 1919.82