Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02472 CCACCACCGTCCCCCCATAGCCACCGTCCTGCCACCATAGCCACCGTCCTCCGCGTCTACTTGGTTCAAGGCTTCTACATCGTCTCTTACGGTCTTGGAATTTACATCCTCAACCTCCTCATCGGTTTCCTCTCCCCTCAGGTCGATCCCGAGATCCACGATGCCCCACCCTCCCCACCAGAGGATCCGATGAGTTCCGTCCTTTCGTTAGCCGCCTCCCTGAGTTCAAGTTCTGAAGGATCTAAATTTCAATTTAAAGAAATTGTGGACATTCAGAATGTCCACACTCCACAGATCATGTTAGCATCTACCTTATACCTGACCGAACTTTGCCGTTTCAGTGGGGTGAAAATCTACCCTGGGAAAGGCATCAGATTTATTCGTAGTGATTCTCAGGTCTTCCTGTTTGCCAACTCAAAATGCAAAAGGTATTTCCACAATAAGTTGAAGCCATCAAAGCTCACCTGGACTGCAATGTATAGGAAGCAACACAAGAAGGACATTGCCCAAGAAGCTGTGAAGATTATCGAGAAATATACAAACTTTTAA 549 0.4718 PPPSPHSHRPATIATVLRVYLVQGFYIVSYGLGIYILNLLIGFLSPQVDPEIHDAPPSPPEDPMSSVLSLAASLSSSSEGSKFQFKEIVDIQNVHTPQIMLASTLYLTELCRFSGVKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAQEAVKIIEKYTNF. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02472 182 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 109 161 - -
Seca1g02472 182 PANTHER 60S RIBOSOMAL PROTEIN L24 108 178 IPR000988 -
Seca1g02472 182 FunFam 60S ribosomal protein L24 106 167 - -
Seca1g02472 182 SMART 4TRASH 111 149 IPR011017 -
Seca1g02472 182 ProSitePatterns Ribosomal protein L24e signature. 113 130 IPR023442 -
Seca1g02472 182 Pfam Rer1 family 15 54 IPR004932 GO:0016020
Seca1g02472 182 CDD Ribosomal_L24e_L24 108 159 IPR000988 -
Seca1g02472 182 Gene3D Ribosomal protein L24e 107 167 IPR038630 -
Seca1g02472 182 Pfam Ribosomal protein L24e 108 170 IPR000988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02472 Seca-Chr1 62805404 62809232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02472 108 181 Cytoplasmic Ribosomal Protein Gene Family AT3G53020 85.135 6.52e-43 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02472 K02896 - cpap:110817360 140.198