Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02457 ATGCCTGATGGCAAGGAACTTGCTGTTAAGATCCTAAAGCCTTCTGATGATGTTTTGAAGGAGTTTCTTTTAGAAATAGAGATCATCACTACCTTGCATCACAAAAACATTATCTCCCTCCTTGGGTTCTGCTTTGAGAATGGCAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAATCTAAATGTACATAACATGTGCAGCATGTTAGAGTTGACCAAATACTTGAACCAGGAAGAAGAGTTACTGTGGCCATGGGTGCCAACCGTAATTTGGATTCTGACTGAAATTTCATTTGAGTTGACTGAATTCTATGAAGAGTGA 339 0.3864 MPDGKELAVKILKPSDDVLKEFLLEIEIITTLHHKNIISLLGFCFENGNLLLVYDFLSRGSLEENLNVHNMCSMLELTKYLNQEEELLWPWVPTVIWILTEISFELTEFYEE. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02457 112 PANTHER OS01G0253100 PROTEIN 2 75 - -
Seca1g02457 112 Pfam Protein tyrosine and serine/threonine kinase 5 81 IPR001245 GO:0004672|GO:0006468
Seca1g02457 112 Gene3D Transferase(Phosphotransferase) domain 1 1 85 - -
Seca1g02457 112 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02457 112 SUPERFAMILY Protein kinase-like (PK-like) 2 75 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02457 Seca-Chr1 61902943 61905601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02457 3 67 Receptor kinase-like Gene Family AT5G56890 43.939 2.77e-14 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca1g02457 PK_Tyr_Ser-Thr 1.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02457 - - lja:Lj1g3v0268780.1 129.413