Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02455 ATGCCAATTCGTTATAGCTACAAAGATCTTGAAGTGGCAACTAATAACTTCTATGTGAGGCTTGGACAAGGGGGTTTTGGGTCAGTTTATAAAGGAGTTCTACCAGATGGGACTCAAATAGCAGTGAAGAAGCTGGAAGGTATTGGCCAAGGGAAAAAAGAGTTTAGAGCTGAAGTTAGCATCATTGGCAGCATTCATCACCTTCATTTGGTCACCTTCATTTCAGATTTTGGTCTGGCTAAGCTAATGAATAGAGAACAAAGCCATGTTTTCACAACACTAAGGGGCACAATGGGATATCTTGCACCAGAGTGGATAACAAACTATGCTATATCAGAGAAAAATGATGTGTATAGCTATGGAATGGTGTTGCTAGAGTTCATAGGGGGAAGGAAAAACTATGATCCTTCTGAAACTTCAGAGAAATCCCATTTCCCAAGTTATGGTTTTAAGATGATGGAAGAAGGGAAACTGCAGGATATTTTTGATTCAGAGCTGAAAATAGATGAATGTGATGATAGGGTTCATTGCGCTATCAAAGTTGCATTGTGGTGCATACAGGAAGACATGTCACAGAGGCCTTCCATGACCAAAGTTGTCCACATGTTAGACATGTCACAGAGGCCTTCCATGACCAAAGATGACAGATATTTGTTGAAACAAACTCACTCCTATAAGTTTTTTAATGTGCCAAACCATTAA 702 0.3974 MPIRYSYKDLEVATNNFYVRLGQGGFGSVYKGVLPDGTQIAVKKLEGIGQGKKEFRAEVSIIGSIHHLHLVTFISDFGLAKLMNREQSHVFTTLRGTMGYLAPEWITNYAISEKNDVYSYGMVLLEFIGGRKNYDPSETSEKSHFPSYGFKMMEEGKLQDIFDSELKIDECDDRVHCAIKVALWCIQEDMSQRPSMTKVVHMLDMSQRPSMTKDDRYLLKQTHSYKFFNVPNH. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02455 233 Pfam Protein tyrosine and serine/threonine kinase 19 73 IPR001245 GO:0004672|GO:0006468
Seca1g02455 233 SUPERFAMILY Protein kinase-like (PK-like) 3 204 IPR011009 -
Seca1g02455 233 Gene3D Phosphorylase Kinase; domain 1 1 74 - -
Seca1g02455 233 Pfam Protein kinase domain 74 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02455 233 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Seca1g02455 233 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 74 207 - -
Seca1g02455 233 FunFam serine/threonine-protein kinase PBS1-like 1 79 - -
Seca1g02455 233 Gene3D Transferase(Phosphotransferase) domain 1 75 218 - -
Seca1g02455 233 ProSiteProfiles Protein kinase domain profile. 1 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02455 Seca-Chr1 61846004 61846705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02455 1 73 Receptor kinase-like Gene Family AT5G20050 49.315 2.75e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca1g02455 Pkinase 1.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02455 - - gmx:100791158 242.276