Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g02446 | ATGCTTGTTTGTCACGAATGCTGTATAAATCAAATTCCAAGTATGGAAGATTCTGATCAACTTGCCAAATCTGCTGAAAACCAACAAACTGAACAAGTGTGTAGTTTCTTTAGAAAACCAGTTAATAAGAAGAATATAAGGAAACGTACTATTGATAATGAAGATGAGGAGGAGGACTCAAACAATGAAAGCTCTTTGTTTCATGTTCAGAAAAAGACCTTGAAGCCTGACAATAAGCTGTACTTTTCCACTGGCTCATCAAAAAGCTCTGCATCTTCTGAACAAAGTGAAGAATCCGGTAAACCAGTCTTTCACTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGACAACAAAGCAACGGCAACTCTAGAGACTGAGACTGAGTTTTCGAAAGATGCTCGTGCAATCCGTGAAAGGGCTCTTCAGCAAGCAGTGGAGAGTTTGAAGGGGAAAGGCACAATTTCTGAGGATGAAAAGTTATATAAGGGAATAAACAATTACAAAGACTACAAGGCTGGCTTTCGTAGAGAGCAAACGATTGCTAGTGAAAAAGCTGGTGGTGCTCATGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCTGACATATGTAAGGATTACAAGGAAACTGGTTATTGTGGGTATGGTGATGCATGCAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGAAGAAGCTGAGAAGGCAAGGAAGATGAGATTGGCTGCAGGTGAGGATGTGGATGAGGAGGGCACTAATGTGACTGATGAAGATGATGATGATTCATTACCATTTGCATGTTTCATTTGTAGAAAGCCATTTGTGGATCCTGTTGTAACAAAGTGCAAGCACTACTTCTGCGAGCATTGTGCGTTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAACCAACACTTGGCATTTTTAATGTTGCTCATGAGATACGCAGGAAGATGGCTGAGGATAAATAA | 1029 | 0.4052 | MLVCHECCINQIPSMEDSDQLAKSAENQQTEQVCSFFRKPVNKKNIRKRTIDNEDEEEDSNNESSLFHVQKKTLKPDNKLYFSTGSSKSSASSEQSEESGKPVFHFESSKEIQVQHDNKATATLETETEFSKDARAIRERALQQAVESLKGKGTISEDEKLYKGINNYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEAEKARKMRLAAGEDVDEEGTNVTDEDDDDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDK. | 343 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g02446 | 342 | Gene3D | - | 204 | 238 | - | - | |
Seca1g02446 | 342 | MobiDBLite | consensus disorder prediction | 76 | 99 | - | - | |
Seca1g02446 | 342 | ProSiteProfiles | Zinc finger C3H1-type profile. | 206 | 234 | IPR000571 | GO:0046872 | |
Seca1g02446 | 342 | SMART | c3hfinal6 | 206 | 233 | IPR000571 | GO:0046872 | |
Seca1g02446 | 342 | CDD | RING-HC_RNF113A_B | 276 | 329 | - | - | |
Seca1g02446 | 342 | SMART | ring_2 | 283 | 320 | IPR001841 | - | |
Seca1g02446 | 342 | MobiDBLite | consensus disorder prediction | 47 | 103 | - | - | |
Seca1g02446 | 342 | SUPERFAMILY | RING/U-box | 282 | 325 | - | - | |
Seca1g02446 | 342 | ProSiteProfiles | Zinc finger RING-type profile. | 283 | 321 | IPR001841 | - | |
Seca1g02446 | 342 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 281 | 340 | IPR013083 | - | |
Seca1g02446 | 342 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 207 | 232 | IPR000571 | GO:0046872 | |
Seca1g02446 | 342 | FunFam | RING finger protein 113A | 281 | 340 | - | - | |
Seca1g02446 | 342 | Pfam | Zinc finger, C3HC4 type (RING finger) | 282 | 324 | - | - | |
Seca1g02446 | 342 | SUPERFAMILY | CCCH zinc finger | 205 | 237 | IPR036855 | GO:0046872 | |
Seca1g02446 | 342 | ProSitePatterns | Zinc finger RING-type signature. | 298 | 307 | IPR017907 | - | |
Seca1g02446 | 342 | PANTHER | ZINC FINGER PROTEIN 183 | 27 | 342 | IPR039971 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g02446 | Seca-Chr1 | 61723006 | 61728327 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g02446 | 13 | 342 | C2H2 Transcription Factor Family | AT1G01350 | 67.273 | 8.18e-169 | 472 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Seca1g02446 | zf-C3HC4_3 | 9.1e-09 | CL0229 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g02446 | K13127 | - | gmx:100787434 | 595.119 |