Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02446 ATGCTTGTTTGTCACGAATGCTGTATAAATCAAATTCCAAGTATGGAAGATTCTGATCAACTTGCCAAATCTGCTGAAAACCAACAAACTGAACAAGTGTGTAGTTTCTTTAGAAAACCAGTTAATAAGAAGAATATAAGGAAACGTACTATTGATAATGAAGATGAGGAGGAGGACTCAAACAATGAAAGCTCTTTGTTTCATGTTCAGAAAAAGACCTTGAAGCCTGACAATAAGCTGTACTTTTCCACTGGCTCATCAAAAAGCTCTGCATCTTCTGAACAAAGTGAAGAATCCGGTAAACCAGTCTTTCACTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGACAACAAAGCAACGGCAACTCTAGAGACTGAGACTGAGTTTTCGAAAGATGCTCGTGCAATCCGTGAAAGGGCTCTTCAGCAAGCAGTGGAGAGTTTGAAGGGGAAAGGCACAATTTCTGAGGATGAAAAGTTATATAAGGGAATAAACAATTACAAAGACTACAAGGCTGGCTTTCGTAGAGAGCAAACGATTGCTAGTGAAAAAGCTGGTGGTGCTCATGGTCCTCTTAGGGCTTCAGCTCATATAAGAGTTTCAGCAAGATTTGATTATCAGCCTGACATATGTAAGGATTACAAGGAAACTGGTTATTGTGGGTATGGTGATGCATGCAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGAAGAAGCTGAGAAGGCAAGGAAGATGAGATTGGCTGCAGGTGAGGATGTGGATGAGGAGGGCACTAATGTGACTGATGAAGATGATGATGATTCATTACCATTTGCATGTTTCATTTGTAGAAAGCCATTTGTGGATCCTGTTGTAACAAAGTGCAAGCACTACTTCTGCGAGCATTGTGCGTTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTCTGCAACCAACCAACACTTGGCATTTTTAATGTTGCTCATGAGATACGCAGGAAGATGGCTGAGGATAAATAA 1029 0.4052 MLVCHECCINQIPSMEDSDQLAKSAENQQTEQVCSFFRKPVNKKNIRKRTIDNEDEEEDSNNESSLFHVQKKTLKPDNKLYFSTGSSKSSASSEQSEESGKPVFHFESSKEIQVQHDNKATATLETETEFSKDARAIRERALQQAVESLKGKGTISEDEKLYKGINNYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEAEKARKMRLAAGEDVDEEGTNVTDEDDDDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRRKMAEDK. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02446 342 Gene3D - 204 238 - -
Seca1g02446 342 MobiDBLite consensus disorder prediction 76 99 - -
Seca1g02446 342 ProSiteProfiles Zinc finger C3H1-type profile. 206 234 IPR000571 GO:0046872
Seca1g02446 342 SMART c3hfinal6 206 233 IPR000571 GO:0046872
Seca1g02446 342 CDD RING-HC_RNF113A_B 276 329 - -
Seca1g02446 342 SMART ring_2 283 320 IPR001841 -
Seca1g02446 342 MobiDBLite consensus disorder prediction 47 103 - -
Seca1g02446 342 SUPERFAMILY RING/U-box 282 325 - -
Seca1g02446 342 ProSiteProfiles Zinc finger RING-type profile. 283 321 IPR001841 -
Seca1g02446 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 340 IPR013083 -
Seca1g02446 342 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 207 232 IPR000571 GO:0046872
Seca1g02446 342 FunFam RING finger protein 113A 281 340 - -
Seca1g02446 342 Pfam Zinc finger, C3HC4 type (RING finger) 282 324 - -
Seca1g02446 342 SUPERFAMILY CCCH zinc finger 205 237 IPR036855 GO:0046872
Seca1g02446 342 ProSitePatterns Zinc finger RING-type signature. 298 307 IPR017907 -
Seca1g02446 342 PANTHER ZINC FINGER PROTEIN 183 27 342 IPR039971 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02446 Seca-Chr1 61723006 61728327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02446 13 342 C2H2 Transcription Factor Family AT1G01350 67.273 8.18e-169 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca1g02446 zf-C3HC4_3 9.1e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02446 K13127 - gmx:100787434 595.119