Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02437 ATGTTCATATTTCGGACTGATTCTCGTTGTAACGCTTTCGGAAAAAGAAAGGAACCTTCTCTGGGGCTGTTTCGTTTTTGCCCTGTTTCTCGCGTGAAGGCTTCTGGTGTTGTAGATAACGGCGATAGTGCTGCATTTGTTAAGGGCGTTGATGAAATTTGTAGAATCTATAGGCTAGAAGAAACCCATAACGTGGTGTGTACTTACTTTGGGGATGATGAGTTCAAAATACAAATATTGAATGGGGACAATAAGTTAGTAAAGTGTCCGGATGTTATAAACAATGGTGTGCCTTTAGAGTTCTCTGATACTGATTCTATTCAAGATCTTGGACCTGTCCTTTTGTGGAGGGTTAATCTGACTAAGGCTGCTGCTTCGGGTAAAAATGTAATGATAAGGCTAGGAAATCGTTATGGGGTTGAGATTAATTATCCCCAAAAGCCAATTGAGGTGGTGGAGATATCTTCGGTTGATAGTGATATTGACAACCAAGATCATGTAGATTCTGATGATGATGGCAGTGATCCTGAGGACTTCTCTTTCTGGATTTTCACAATGACCAAGTCATTTGCTTCAAGGAAAAATGCTTTGATTCTTTGCAAAATATCAAAAGGTTCTAGAAGGAAGGATGAACGATATCTGTGTAGTGGTTGGTACAAGTTTTGTCGCAACAATAACTTCAAAGAGGGAGATATGTTGTTGTTTTATTCAAAGGGTGATCGTTACAATCTAATAATGACTTCATGGGAAAAGGGAGAATCCTCCAAGAAAAGTCCCTTATTGAGGTGTTTTCAAGCAAAGTTGGATCCATCTGAGGCAACTATGCTTATAGATAGGAGATTTCATGCCATTCGGGAAAATCATTTCAATGATCGTTATTTCAGTTTAAGAGATCCTGAGCAAAATATTCATTGTGTTGGCACTATTAGGAATAGAGATGGTGATTATGTTTTCTATGTTGGAGTTCAATACATCATAGAGTTTTATCATTTGGAAGGTATCCATATTGTCCACTTCACCTATGTTGGGGACAAGTTCTTTGACATTAAAATTCTTAATATACATGATAAGGAGATAAATTATCCAAAAAATGGAGGTTGGGATAATTTTGTTCCTAGGGACTCTGACCATATTGAGGTAGTAGAACAAGTCGAAGAAGGATGGACCGTCAGAGTCACAAAAGCCATCGAAAGTGGGAGTAATCCATTGCCAATTCCTGCTAAAATTGTCCGTAAAGTGCTTAAAGAGAACCAACGACTGGTGTACATCTTTGATAGGGATGAAAATGTCTTCATTGTCGATCTGAGGCGTGGAAGAAGAATAGGAGAATGCTACATTGGAATGGGATGGTATCAATTTGTTAAAGATAAAAAGCTGAACGAGGGAGACACTGTGGAGTTTAAATTTATTGATAGTCACAGATACATTTATGCAAAAATAATTAGAGGTTGA 1452 0.3795 MFIFRTDSRCNAFGKRKEPSLGLFRFCPVSRVKASGVVDNGDSAAFVKGVDEICRIYRLEETHNVVCTYFGDDEFKIQILNGDNKLVKCPDVINNGVPLEFSDTDSIQDLGPVLLWRVNLTKAAASGKNVMIRLGNRYGVEINYPQKPIEVVEISSVDSDIDNQDHVDSDDDGSDPEDFSFWIFTMTKSFASRKNALILCKISKGSRRKDERYLCSGWYKFCRNNNFKEGDMLLFYSKGDRYNLIMTSWEKGESSKKSPLLRCFQAKLDPSEATMLIDRRFHAIRENHFNDRYFSLRDPEQNIHCVGTIRNRDGDYVFYVGVQYIIEFYHLEGIHIVHFTYVGDKFFDIKILNIHDKEINYPKNGGWDNFVPRDSDHIEVVEQVEEGWTVRVTKAIESGSNPLPIPAKIVRKVLKENQRLVYIFDRDENVFIVDLRRGRRIGECYIGMGWYQFVKDKKLNEGDTVEFKFIDSHRYIYAKIIRG. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02437 483 Gene3D - 188 247 IPR015300 -
Seca1g02437 483 PANTHER B3 DOMAIN-CONTAINING 296 470 - -
Seca1g02437 483 SUPERFAMILY DNA-binding pseudobarrel domain 180 242 IPR015300 -
Seca1g02437 483 CDD B3_DNA 405 482 IPR003340 GO:0003677
Seca1g02437 483 Gene3D - 382 482 IPR015300 -
Seca1g02437 483 SMART B3_2 389 480 IPR003340 GO:0003677
Seca1g02437 483 Pfam B3 DNA binding domain 398 481 IPR003340 GO:0003677
Seca1g02437 483 SUPERFAMILY DNA-binding pseudobarrel domain 390 475 IPR015300 -
Seca1g02437 483 ProSiteProfiles B3 DNA-binding domain profile. 388 483 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02437 Seca-Chr1 61411727 61421869 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g02437 B3 1.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02437 - K09287 aprc:113861038 77.7962