Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02433 ATGGTCCCTATAAAAACCTCTCCAAACAACATAAAACAACTGAAAACGTGTCCCGGGTTAACCAACGCCCTTCGGGTTTGGGTTCTCTCGTGGTACCGGGTCATCTCCACCATGTACGGCAGTTGCAGCGACAGCGACAATGACAATCAACTCCATGGCCATGACAATGATGACACATTGGACTTTCGAAACCTTAAGGTTGTCTCCGCCGTGGGACGCGGCGCGAAGGGCGTGGTGTTCCTTGCGAGAACCTACAACGCGTCAAACGGGGAATGGCTTGCCTTGAAAGCCATTTCCAAAGCCTTGCTTCTGAAGAAAAACAAGAACCGCAATAGTGAGTGCAAAAGGGTATCGTTTGAACAACAAATACTACGTCGTTTCGACCACCCATTATTACCGCGATTACGAGGGGTTTTTGAGACCCAAGAACTCAAAGGATTCGCCATCGACTATTGCCATGGTGGGACTTTGCACTCTCTTCGTAAGAAGCAAACCGAGAAAACATTCTCTGAAGAAACCATAAGGTTTTACGCAGTTGAATTGATCTTGGCATTGGAGTATTTGCATAATTTGGGAGTAGTGTATAGGGATTTGAAGCCTGAGAACATCATGATCCAACAAACGGGTCATATAATGCTTGTGGATTTCGATCTCTCCAAGAAGCTGAACCCCAAGTCACCAAACTCGCTAAGTTGTAGCTCATCCCCGGGTTCTGACTCGGAGAAAGACTTGAGGAAGCGACGATTCTCGCGGTTCTACTGTTACTGTCACTCGGGGATGCTACCGCATGACTCAGAGAGTCAGCTCGACACCAACTCAGCGCGTCGAAGCGCGTCGGACTCAGTGGAAAAGTCCAACTCGTTCGTAGGAACAGAGGATTACGTGGCACCAGAGGTTGTATCTGGTGAAGGACACAACTTTGGGGTAGATTGGTGGTCATTCGGCGTCGTTTTATATGAGATGCTTTACGGGATGACACCATTTAAGGGCACAAATAGGAGAGAAACGTTTCATCGAATTTTAACCAAGGAGCCTGATCTGACCGGTGAAATGACGCCGTTGAGGGACTTGATTGGGAGATTACTTGAGAAAGAACCTAACCGTAGGATCGAGGTGGATGAAATCAAGGGCCATGATTTCTTTAAAGGTGTGAAGTGGGATACGGTCTTGGAGATTGCACGTCCACCATATATTCCACAGAGTGAGGTTGAGGACACAAAGGGGTTTTCAAGAAAAGACGTGGAGTCATTTGTCCATGGGATATTTTTCCCTAAGAATAATAATGGTGAGGGAGAGAAAAATAATGAGGTGGTGAAAAAGAAGGATGAAAAGAGGAAAGAGGACAATAATAATCACAATAGTAATAAGCAAGTGTGGGTTGACAAGTTGAATCAGAATCCTAATAAGGACGAAAATTTTTTAATTTTTTGA 1431 0.4556 MVPIKTSPNNIKQLKTCPGLTNALRVWVLSWYRVISTMYGSCSDSDNDNQLHGHDNDDTLDFRNLKVVSAVGRGAKGVVFLARTYNASNGEWLALKAISKALLLKKNKNRNSECKRVSFEQQILRRFDHPLLPRLRGVFETQELKGFAIDYCHGGTLHSLRKKQTEKTFSEETIRFYAVELILALEYLHNLGVVYRDLKPENIMIQQTGHIMLVDFDLSKKLNPKSPNSLSCSSSPGSDSEKDLRKRRFSRFYCYCHSGMLPHDSESQLDTNSARRSASDSVEKSNSFVGTEDYVAPEVVSGEGHNFGVDWWSFGVVLYEMLYGMTPFKGTNRRETFHRILTKEPDLTGEMTPLRDLIGRLLEKEPNRRIEVDEIKGHDFFKGVKWDTVLEIARPPYIPQSEVEDTKGFSRKDVESFVHGIFFPKNNNGEGEKNNEVVKKKDEKRKEDNNNHNSNKQVWVDKLNQNPNKDENFLIF. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02433 476 ProSiteProfiles AGC-kinase C-terminal domain profile. 382 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Seca1g02433 476 MobiDBLite consensus disorder prediction 432 452 - -
Seca1g02433 476 FunFam Serine/threonine-protein kinase OXI1 156 224 - -
Seca1g02433 476 Pfam Protein kinase domain 67 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02433 476 Pfam Protein kinase domain 283 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02433 476 SUPERFAMILY Protein kinase-like (PK-like) 58 414 IPR011009 -
Seca1g02433 476 Gene3D Transferase(Phosphotransferase) domain 1 156 228 - -
Seca1g02433 476 Gene3D Transferase(Phosphotransferase) domain 1 270 400 - -
Seca1g02433 476 MobiDBLite consensus disorder prediction 424 476 - -
Seca1g02433 476 MobiDBLite consensus disorder prediction 265 284 - -
Seca1g02433 476 SMART serkin_6 65 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02433 476 ProSiteProfiles Protein kinase domain profile. 65 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02433 476 FunFam Serine/threonine-protein kinase OXI1 283 400 - -
Seca1g02433 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Seca1g02433 476 PANTHER FLIPPASE KINASE 1-RELATED 54 407 - -
Seca1g02433 476 Gene3D Phosphorylase Kinase; domain 1 65 155 - -
Seca1g02433 476 MobiDBLite consensus disorder prediction 453 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02433 Seca-Chr1 60912578 60914755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02433 59 476 AGC Kinase Gene Family AT3G25250 52.887 9.00e-150 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca1g02433 Pkinase 1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02433 K20714 - gmx:100813693 581.637