Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02427 ATGGCCAAACCTGGGGTATTGGACTCTGATCCGGAGGTTATGGTGAGGAAGAAGACCATAGAGTTGAAGAAAGAGTTGCAGAGGCTGGTAAAATCCATTGTTGATGATGAGAATTACAACACTGAGGCCATTGATGAAGCTATGGAGACTCTCAGAGTGTTGAAGCTGAGAAAGAAGTCTTCACTTTCTTTGAAGCTGAACAAGGCTGTGACCTGCCCAGATGAATTCAAATGTCCACTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTAGCTTCTGGTCAGACTTATGACAGACCTTTCATTCAAAAATGGCTGAATGCTGGAAATAGGACTTGCCCTCGAACCCATCAAGTCCTCTCACACACTGTCCTTACTCCAAATCAACTAGTAAGGGATATGATAGAACAATGGTCTAAAAACCAAGGGATTGAATTGTCCAATAGTGTTCACTATATTGATGAGGAAGGTATAAAAGAAGCAGATCGTGACCATTTTCTTTGTTTGCTTAACAAAATGTCTTCAACACTGTCTGATCAGAAAGCAGCTGCAAAAGAACTTCGCTTGTTAACAAAGAAGCATCCTTGTTTTCGAGTACTCTTCTGTGATTCTGAAAATGCCATTTCTCAATTGCTTAAACCAATTTGTAGGAGTGATTCTTTTAGTAGTGTTCACCCTGATCTCCAAGAAGATGTAATCACAACACTACTCAATATCTCAATTCATGACAACAACAAGAAGTTAGTAGCTGAAACTCCAATGGTGATTTCAATCCTTACAAAATCATTGAGATCCGGAACAATTGAAACAAGAAGCAATGCTGCTGCAGCCCTTTTCACTTTGTCAGCTCTTGATTCAAACAAGGAACTTATAGGGAAATCTGATGCTTTAAAGCCATTGATTGATCTATTGGAAGAAGGGCATTCCTTAGCTATGAAGGATGTTGCTTCAGCAATTTTCAGTTTATGTGTCTATCATGAGAACAAGGCAAGAGCAGTGAAGAATGGTGCAGTGAAGGTGATTTTGACAAAGATAAAGAACCGGATTCATGTCGATGAATTACTGGCTATCCTTGCACTGCTTTCAAGTCACCACAATGCTGTTCAAGACATGGGAGAGCTAGGAGCTGTTCCTACCTTGTTAAGCATTATCAAAGAGAGTTCCTGTGAAAGGAACAAGGAGAATTGCATAGCTATCCTTCAAACTATCTGTTTGTATGATAGATCCAAGTTGAAGGAAATAAAGGAAGAGGAGAACAGTCACAAAACAATCTCTCAACTTGCTCAGAGTGGAACATCAAGGGCTAAGAGAAAAGCTAGTGGAATTCTTGAGAGACTGAACAGGGTTGTTAATATCACACACACTGCATAA 1371 0.399 MAKPGVLDSDPEVMVRKKTIELKKELQRLVKSIVDDENYNTEAIDEAMETLRVLKLRKKSSLSLKLNKAVTCPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLNAGNRTCPRTHQVLSHTVLTPNQLVRDMIEQWSKNQGIELSNSVHYIDEEGIKEADRDHFLCLLNKMSSTLSDQKAAAKELRLLTKKHPCFRVLFCDSENAISQLLKPICRSDSFSSVHPDLQEDVITTLLNISIHDNNKKLVAETPMVISILTKSLRSGTIETRSNAAAALFTLSALDSNKELIGKSDALKPLIDLLEEGHSLAMKDVASAIFSLCVYHENKARAVKNGAVKVILTKIKNRIHVDELLAILALLSSHHNAVQDMGELGAVPTLLSIIKESSCERNKENCIAILQTICLYDRSKLKEIKEEENSHKTISQLAQSGTSRAKRKASGILERLNRVVNITHTA. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02427 456 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
Seca1g02427 456 PANTHER U BOX DOMAIN-CONTAINING 18 446 - -
Seca1g02427 456 Gene3D - 351 450 IPR011989 -
Seca1g02427 456 FunFam RING-type E3 ubiquitin transferase 351 452 - -
Seca1g02427 456 FunFam RING-type E3 ubiquitin transferase 71 145 - -
Seca1g02427 456 CDD RING-Ubox_PUB 73 125 IPR045210 -
Seca1g02427 456 SUPERFAMILY ARM repeat 167 446 IPR016024 -
Seca1g02427 456 Gene3D - 204 350 IPR011989 -
Seca1g02427 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 145 IPR013083 -
Seca1g02427 456 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
Seca1g02427 456 Pfam U-box domain 73 142 IPR003613 GO:0004842|GO:0016567
Seca1g02427 456 SUPERFAMILY RING/U-box 71 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02427 Seca-Chr1 60816731 60820093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02427 134 456 U-box Gene Family AT3G07360 59.091 4.96e-127 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02427 - - gmx:100777031 733.021