Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02420 ATGGAAAATCAATTCTTTTCTAATGCTGGTGTCCACCCTCACCTGCATTTTGAGCCTTCACAGCCTCCTTCAATGCCCACTTGGCAATCACTCCCATCTGCCATGGATGTTCAACTAACTCCTTTGAATTGTTCATCTGAGCAAACCCAAGATTGCTTTTACACCCCACCTTGGGATAAGTCAACGGATCATGGTCTTCAGTTTGATTCTGCTCTTAGTTCAATGGTTTCTTCTCCTGCTGCTTCCAATTCCAACATGTCCAATGAGAATTTTGTCATCAGGGAACTCATTGGAAAATTGGGAAACATTGGTGGTGGTTGTTCTGATGAGATCTCACCTCATTCTCACCCTTTGGTTCCTGCATCTTCCTACATCAATGGCAATAACAGCACCAATACTTCATGTTATAGCACCCCTTTGAGTTCTCCTCCTAAGGTGAACATCCCCACTGTAGTGAACCACTTGGTGAAAGACAACATACCCAGTTTAGGGAAATCAATGGCCTTGAATTCCACTGTGGCAGAATTCTCAGCTGATCCTGGTTTTGCAGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGCAGAAGTTTCAATGGAAGGACTAGTCAATTGGGGCTGAACAATGCTGAATTAACTCAGAGATCTACTAACTTGATGGAAAATGTGAAGCTCCCTAGAGTCTCAAGTAGTCCATCACTAAAAGCACTTGGATCTCAAATGGGTACACAGGACAACAAGAATTCTCAATTGCAGGACCTAATGGAAGTTGCTAATTCACAAGAAGAATCTACAATTTCTGAGCAAACCCCAAATGGGGACACTGGGGTTAAGCCTTCCCCTTTTGTCAATTCCAGGAAAAGAAAACCTTCTTCCAAAGGAAAAGCAAAAGAAACTTCAACTTCAACCAACCCTCCCATGGCTGCTGAAGCTAGTGAAGACTCAAATGCAAAGAGAAGCAAGACAAATGATGGTGAGGGAAATGAAAATGGGCAAGTGAAGGTAGAGGAAGAGTCCAAAGGGGGAACTAGTAATGCAGGTGATGAGAAACAGAACAAGAGTAACTCAAAACCTCCTGAGCCTCCAAAGGATTATATTCATGTTAGAGCAAGAAGAGGTCAAGCCACTGATAGTCATAGTCTTGCAGAAAGGGTAAGAATCACTTTCATTTCCTTTCTCTGA 1179 0.4283 MENQFFSNAGVHPHLHFEPSQPPSMPTWQSLPSAMDVQLTPLNCSSEQTQDCFYTPPWDKSTDHGLQFDSALSSMVSSPAASNSNMSNENFVIRELIGKLGNIGGGCSDEISPHSHPLVPASSYINGNNSTNTSCYSTPLSSPPKVNIPTVVNHLVKDNIPSLGKSMALNSTVAEFSADPGFAERAAKFSCFGSRSFNGRTSQLGLNNAELTQRSTNLMENVKLPRVSSSPSLKALGSQMGTQDNKNSQLQDLMEVANSQEESTISEQTPNGDTGVKPSPFVNSRKRKPSSKGKAKETSTSTNPPMAAEASEDSNAKRSKTNDGEGNENGQVKVEEESKGGTSNAGDEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRITFISFL. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02420 392 MobiDBLite consensus disorder prediction 313 343 - -
Seca1g02420 392 MobiDBLite consensus disorder prediction 217 278 - -
Seca1g02420 392 MobiDBLite consensus disorder prediction 217 378 - -
Seca1g02420 392 MobiDBLite consensus disorder prediction 1 29 - -
Seca1g02420 392 MobiDBLite consensus disorder prediction 295 309 - -
Seca1g02420 392 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 258 386 IPR024097 GO:0006355
Seca1g02420 392 MobiDBLite consensus disorder prediction 352 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02420 Seca-Chr1 60302152 60305095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02420 1 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 38.095 1.15e-52 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02420 - - gmx:100787699 595.504