Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02419 ATGGGCATTTCAAGGGATTCTATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGTCGCCAGCCAGCAAATACCAAGTTATCAAGCAACAAGACAGTTAGGAGGATTCGTGTCAGAGGTGGCAATGTGAAATGGAGGGCATTGAGATTGGATACTGGAAATTACTCATGGGGTAGTGAAGCAGTAACTCGCAAGACTCGTATTCTAGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGAACTCAAACCCTGGTCAAGAGTGCTATTGTGCAAGTTGATGCCGCTCCATTCAAACAGTGGTACTTGCATCACTATGGTGTTGATATTGGTAGAAAAAAGAAAACAGCATCCAAGAAGGACTCTACAGAGGAGGGTGGTGAAGCTGCTGCTGAAGAAACTAAGAAAAGTAATCATGTTCAGAGAAAACTAGAGAAGCGCCAGAAAGATCGTAAGCTTGATCCTCACATTGAAGAGCAGTTTGGTGGTGGTCGATTGCTAGCCTGTATTTCTTCTCGCCCTGGTCAATGTGGCCGGGCTGATGGGTATGCTTAA 591 0.4569 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLHHYGVDIGRKKKTASKKDSTEEGGEAAAEETKKSNHVQRKLEKRQKDRKLDPHIEEQFGGGRLLACISSRPGQCGRADGYA. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02419 196 Pfam Ribosomal protein S8e 5 195 IPR022309 -
Seca1g02419 196 FunFam 40S ribosomal protein S8 109 176 - -
Seca1g02419 196 Gene3D - 25 196 - -
Seca1g02419 196 NCBIfam ribosomal protein eS8 1 195 IPR001047 GO:0003735|GO:0005840|GO:0006412
Seca1g02419 196 MobiDBLite consensus disorder prediction 1 38 - -
Seca1g02419 196 CDD Ribosomal_S8e_like 5 195 - -
Seca1g02419 196 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Seca1g02419 196 MobiDBLite consensus disorder prediction 11 26 - -
Seca1g02419 196 FunFam 40S ribosomal protein S8 32 161 - -
Seca1g02419 196 Gene3D Ribosomal protein S8e, subdomain 108 176 IPR042563 -
Seca1g02419 196 MobiDBLite consensus disorder prediction 126 170 - -
Seca1g02419 196 PANTHER 40S RIBOSOMAL PROTEIN S8 1 195 IPR001047 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02419 Seca-Chr1 60253355 60256019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02419 1 195 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.184 2.11e-117 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02419 K02995 - pcin:129288318 366.696