Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02412 ATGATGGAAGAAGAGTTGGATATTCCCCAACCTGAGGAGATGAACGAGGACTTTGATCTTCCCCCCGAAGACAAGGCGGGCGAGGAGAGAGAGATCGGCAACCACGGCCTCAAGAAGAAGCTCCTCAAGCAAGGTCAAGGCTGGGACACCCCCGAAGTCGGCGATGAAGTTCAAGTTCACTACACTGGGACTTTGCTTGATGGGACTAAGTTCGATTCCAGCCGCGACAGGGGTACTCCTTTCAGCTTCACGCTTGGACAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCACTTTTCACCATCCCTCCTGAGCTAGCTTATGGTGAATCTGGTTCCCCTCCAACAATTCCTCCTAATGCTACACTCCAATTCGATGTTGAGCTACTGTCTTGGACTAGTGTGAAGGACATATGTAAAGATGGCGGCATATTTAAGAAGATACTTACTGAGGGGGAGAAATGGGAGAATCCCAAGGATCCTGATGAAGTATTGGTTAAGTATGAGGTTCATCTGGAAGATGGAAAGCTTGTTGCAAAGTCTGATGGGGTGGAGTTCACCGTCAATGAGGGTCATTATTGTCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTTTGACAGTAAAGCCACAATATGGATTTGGTGAGAAGGGACAGCCAGCACATGGTGATGAAGGTGCAGTTCCTCCAAATGCAACATTGCAGATTACTCTTGAGTTAGTTTCTTGGAAGACTGTATCGGAAGTAACTGGTGACAAGAAGGTCATAAAGAAGATCCTCACGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTGAAATTGAAACTAATTGGTAAGCTGCAAGATGGCACTGTCTTTTCAAAAAAGGGCCATGATGAAGATGAGCAGCTGTTTGAATTCAAAACAGATGAGGAACAAGTCATTGACGGACTTGATAGAGCTGTAATGACTATGAAGAAGGGTGAGGTAGCATTATTGACTATTGCGCCCGAGTATGCTTTTGGTTCATCAGAGTCCCAACAAGAGTTTGCGGTGATCCCTCCTAACTCAACTGTGTATTATGAAGTTGAGCTAGTGTCATTTGAGAAGGAGAAGGAATCCTGGGATCTTAACACTCAAGAGAAACTTGAAGCTGCTGGTAAGAAGAAAGAAGAGGGGAATGTGTTGTTCAAAGCTGGTAAATATGCTAGAGCTTCCAAAAGATATGAAAAGGCTGTGAAGTACATCGAGTATGATTCCTCATTCAGTGAGGAGGAGAAAAAGCAGTCGAAGATCTTGAAGGTTGCCTGCAATCTAAACAATGCTGCTTGCAAATTGAAGTTAAAAGACTATAAAGAAGCAGAGAAATTGTGTACCAAGGTATTGGACCTTGAGACCACAAACGTTAAAGCCCTCTATAGAAGGGCCCAGGCATATATGCAGTTGGCTGATTTGGATTTGGCTGAATTGGACATCAAGAAAGCTCTTGAGATTGACCCTGACAACAGGGATGTCAAGCTGGAATACAAGACTTTGAAGGAAAAAGTAAAGGAGTATAACAAAAAGGAGGCGAAATTTTATGGAAATATGTTCAAGTTTACAAAGACCGGATACTGA 1650 0.437 MMEEELDIPQPEEMNEDFDLPPEDKAGEEREIGNHGLKKKLLKQGQGWDTPEVGDEVQVHYTGTLLDGTKFDSSRDRGTPFSFTLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILTEGEKWENPKDPDEVLVKYEVHLEDGKLVAKSDGVEFTVNEGHYCPALSKAVKTMKKGEKVILTVKPQYGFGEKGQPAHGDEGAVPPNATLQITLELVSWKTVSEVTGDKKVIKKILTEGEGYERPNEGAIVKLKLIGKLQDGTVFSKKGHDEDEQLFEFKTDEEQVIDGLDRAVMTMKKGEVALLTIAPEYAFGSSESQQEFAVIPPNSTVYYEVELVSFEKEKESWDLNTQEKLEAAGKKKEEGNVLFKAGKYARASKRYEKAVKYIEYDSSFSEEEKKQSKILKVACNLNNAACKLKLKDYKEAEKLCTKVLDLETTNVKALYRRAQAYMQLADLDLAELDIKKALEIDPDNRDVKLEYKTLKEKVKEYNKKEAKFYGNMFKFTKTGY. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02412 549 Gene3D - 146 259 IPR046357 GO:0003755
Seca1g02412 549 Gene3D - 260 381 IPR046357 GO:0003755
Seca1g02412 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 54 142 IPR001179 GO:0003755
Seca1g02412 549 SUPERFAMILY FKBP-like 146 262 - -
Seca1g02412 549 FunFam Peptidylprolyl isomerase 385 540 - -
Seca1g02412 549 SUPERFAMILY FKBP-like 262 397 - -
Seca1g02412 549 Gene3D Tetratricopeptide repeat domain 383 540 IPR011990 GO:0005515
Seca1g02412 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 287 380 IPR001179 GO:0003755
Seca1g02412 549 MobiDBLite consensus disorder prediction 20 38 - -
Seca1g02412 549 FunFam Peptidylprolyl isomerase 146 259 - -
Seca1g02412 549 FunFam Peptidylprolyl isomerase 27 145 - -
Seca1g02412 549 Gene3D - 26 145 IPR046357 GO:0003755
Seca1g02412 549 FunFam Peptidylprolyl isomerase 260 382 - -
Seca1g02412 549 MobiDBLite consensus disorder prediction 1 19 - -
Seca1g02412 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 50 139 IPR001179 GO:0003755
Seca1g02412 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 377 IPR001179 GO:0003755
Seca1g02412 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 165 256 IPR001179 GO:0003755
Seca1g02412 549 PANTHER PEPTIDYLPROLYL ISOMERASE 9 143 - -
Seca1g02412 549 Coils Coil 513 533 - -
Seca1g02412 549 SUPERFAMILY FKBP-like 25 147 - -
Seca1g02412 549 MobiDBLite consensus disorder prediction 1 38 - -
Seca1g02412 549 ProSiteProfiles TPR repeat profile. 480 513 IPR019734 GO:0005515
Seca1g02412 549 Pfam Tetratricopeptide repeat 480 513 IPR001440 GO:0005515
Seca1g02412 549 SUPERFAMILY TPR-like 386 542 IPR011990 GO:0005515
Seca1g02412 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 170 259 IPR001179 GO:0003755
Seca1g02412 549 SMART tpr_5 446 479 IPR019734 GO:0005515
Seca1g02412 549 SMART tpr_5 397 430 IPR019734 GO:0005515
Seca1g02412 549 SMART tpr_5 480 513 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02412 Seca-Chr1 60129152 60134403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02412 14 542 Calmodulin-binding Proteins AT3G25230 78.571 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02412 K09571 - gmx:100812632 962.214