Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02405 ATGAACAGCCTAAGAGGTGATGTACCTTGCTTCATTTATTATGTTCTGATCTTGATCATGATTTTATTAATGCTAACATTACAGGGTTATGTCGTTTACCGTGTTCGTGTCCTAAGGGGAGGCAGGAAGAGACCAGTTCCCAAAGGTATTGTCTATGGGAAGCCTACAAATCAAGGTGTTACTCAACTGAAATTTCAGAGGAGCAAGAGGTCAGTTGCTGAGGAGCGAGCTGGACGGAAACTGGGTGGCCTCAGGGTCCTCAATTCATACTGGGTGAATGAGGACTCAACTTACAAATATTTTGACATTATTTTGGTGGATGTTGCACACAGTGCAGTAAGAAATGATCCAAGGATCAATTGGCTTTGCAATCCAGTCCACAAACACAGGGAACTGCGTGGCCTCACTTCCGCCGGGAAACACAACAGAGGTTTACGGGGCAAAGGACATAATTACCACAAAGCTCGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTTTCTCTTCGTCGTTACCGTTGA 528 0.4564 MNSLRGDVPCFIYYVLILIMILLMLTLQGYVVYRVRVLRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFDIILVDVAHSAVRNDPRINWLCNPVHKHRELRGLTSAGKHNRGLRGKGHNYHKARPSRRATWKRNNTLSLRRYR. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02405 175 Pfam Ribosomal L15 27 161 IPR000439 GO:0003735|GO:0005840|GO:0006412
Seca1g02405 175 MobiDBLite consensus disorder prediction 143 160 - -
Seca1g02405 175 PANTHER RIBOSOMAL PROTEIN L15 28 175 IPR000439 GO:0003735|GO:0005840|GO:0006412
Seca1g02405 175 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 27 166 IPR012678 GO:0003735|GO:0005840|GO:0006412
Seca1g02405 175 SMART Ribosomal_L15e_2 10 164 IPR000439 GO:0003735|GO:0005840|GO:0006412
Seca1g02405 175 FunFam Ribosomal protein L15 22 175 - -
Seca1g02405 175 MobiDBLite consensus disorder prediction 136 160 - -
Seca1g02405 175 Gene3D Ribosomal protein l15e 25 175 IPR024794 GO:0003735|GO:0005840
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02405 Seca-Chr1 59961785 59963066 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02405 45 175 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 90.076 2.64e-85 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02405 K02877 - gmx:100306052 278.87