Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02404 ATGGGTGCCTACAAGTATGTTTCGGAGCTTTGGCGCAAGAAGCAATCCGATGTGATGAGATTCTTGCAGCGGGTGAGGTGCTGGGAGTACCGTCAGCAACCTTCCATTGTCCGCCTCACAAGGCCTACTCGCCCAGACAAGGCTCGCCGTTTGGGTTATAAGGCTAAGCAGGGTTATGTCGTTTACCGTGTTCGTGTCCGAAGGGGTGGCAGGAAGAGACCAGTTCCCAAAGGTATTGTCTATGGGAAGCCTACAAATCAAGGTGTTACTCAACTGAAATTTCAGAGGAGCAAGAGGTCAGTTGCTGAGGAGCGAGCTGGACGGAAACTGGGTGGCCTCAGGGTCCTCAATTCATACTGGGTGAATGAGGACTCAACTTACAAATATTTTGAGATTATTTTGGTGGATGTTGCACACAGTGCAGTAAGAAATGATCCAAGGATCAATTGGCTTTGCAATCCAGTCCACAAACACAGGGAACTGCGTGGCCTCACTTCCGCCGGGAAACACAACAGAGGTTTACGGGGCAAAGGACATAATTACCACAAAGCTCGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACCCTTTCTCTTCGTCGCTACCGTTGA 615 0.5024 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHSAVRNDPRINWLCNPVHKHRELRGLTSAGKHNRGLRGKGHNYHKARPSRRATWKRNNTLSLRRYR. 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02404 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Seca1g02404 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Seca1g02404 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Seca1g02404 204 MobiDBLite consensus disorder prediction 165 189 - -
Seca1g02404 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Seca1g02404 204 MobiDBLite consensus disorder prediction 172 189 - -
Seca1g02404 204 FunFam Ribosomal protein L15 1 204 - -
Seca1g02404 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Seca1g02404 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02404 Seca-Chr1 59942740 59945470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02404 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 93.137 3.98e-129 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02404 K02877 - gmx:100306052 387.111