Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02396 ATGGCATCACTATATCTCCTTCGAGGTTCTAGTTGCTATGGAACGATTACGCTTTGGTCGCGTTCTACGGATGTTATGGCCTTTGACTATTCAAATGCAGTACGTATGATTGAGGCTGCCACCACCGTTGAGGAACTTGATGAAGTGGTGGGAACGTTGCTTGGACAGCCGGAGGAGACAATTTTGAAGTACATTAAACTTGAAAATTTAGTGCTAGAAGATAAGGAGACTCAAGAAGTATGTTGCATATGTCAGGAAGAATATGTTAATGGAGATGAAGTTGGGAAGCTAGATTGTGAGCACAAGTTTCATATTGAGTGCATAAAACAATGGCTCAAGCAAAAAAATGAATGCCCCATTTGCAGACAAATGGTATTACTTTCAAATGATGAAGGAGAAGAGAATGATGATGAAGAGCAAATTCCCATCATGGATATATTTTATATATAG 450 0.3911 MASLYLLRGSSCYGTITLWSRSTDVMAFDYSNAVRMIEAATTVEELDEVVGTLLGQPEETILKYIKLENLVLEDKETQEVCCICQEEYVNGDEVGKLDCEHKFHIECIKQWLKQKNECPICRQMVLLSNDEGEENDDEEQIPIMDIFYI. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02396 149 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 55 125 IPR045191 GO:0061630
Seca1g02396 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 127 IPR013083 -
Seca1g02396 149 Pfam Ring finger domain 81 122 IPR001841 -
Seca1g02396 149 SUPERFAMILY RING/U-box 69 127 - -
Seca1g02396 149 ProSiteProfiles Zinc finger RING-type profile. 81 122 IPR001841 -
Seca1g02396 149 SMART ring_2 81 121 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02396 Seca-Chr1 59568974 59570580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02396 46 126 C3H Transcription Factor Family AT2G15530 46.591 4.02e-19 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02396 - K22753 lang:109350901 96.6709