Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02394 ATGACTCAGTGCAGTTACCCTGAAAACAATCACAACATCATTGTTGAGAGGCGTAAGGACAGCTTAATCAGTACTTGTCCTACATGTGGTCATCACATCAAATGCCAAGAGCAGGCTGCTGGGATTCATGACTTACCTGGACTACCTGCTGGAGTGAAGTTTGATCCTACTGATCAAGAGATTCTTGAACATTTGGAAGCTAAGGTGCGCTCTGATATTCACAAGCTTCACCCTTTAATTGATGAGTTCATCCCTACTCTTGAAGGAGAGAATGGAATCTGCTGTACCCATCCAGAGAAGTTGAAAGAATAA 312 0.4295 MTQCSYPENNHNIIVERRKDSLISTCPTCGHHIKCQEQAAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICCTHPEKLKE. 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02394 103 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 21 101 IPR044799 GO:0003700
Seca1g02394 103 ProSiteProfiles NAC domain profile. 48 103 IPR003441 GO:0003677|GO:0006355
Seca1g02394 103 Pfam No apical meristem (NAM) protein 49 102 IPR003441 GO:0003677|GO:0006355
Seca1g02394 103 SUPERFAMILY NAC domain 42 101 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02394 Seca-Chr1 59528745 59529619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02394 25 101 NAC Transcription Factor Family AT4G28500 80.519 2.04e-39 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02394 - - gmx:100791648 213.772