Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02375 ATGGCTTCGAGATATGACTTAGTTAAAGATGTAAATGTTGGTTCTAACCATAAGATATGGAGGATCAAAGTAAGGGTAATTCGTTTATGGAGATCTGCTAACTTTAGGGACAATAACAATAATTCCAAGCCCATGATTGAAATGGTTGTGGTGGATGAGAAGGGGGACCAGATTCAATGCACTGTCAAGAGCTTTCATGTCTACCTATTTGAAAGAAATATTCTGGAGGGCAATGTTTACATGATTTCAAATCTCTCAGTTGCTTTGAATGCTGCAAATTTTAAACCATCTTTTCATGAATTTAGAATGTTCTTTAAAAGAGAAACTGAGGTTCGTTTGATTGAAGATTCTACTATACCAAACAATGTCTTCTCTTTCTTTCCATTCAAGGATATATTGAATGAGGAATTGGAAGATCGTCATTTAGTTGATGTAATTGGTCTCCTTTCTGGTAAGGGTGACTTGATCGAGTTTAAAAGGAATGGAAAGATCTGTAACTATGTTGTTTTAGAGCTGGATGATTTTGAGGGTGGAAATAAGCTTCGATGCACTTTATGGGAAGATTTTGCTCATGATTTTCTTAGGCAGCTCGATGAGGATAAGTCAAATGTATTTGTTATTGTTTTGCAATTTGCAAAGATGAAGTTCTTCAAAGGTTCAATGAGGGTGTCCAGTAATACTTACAATACTAAGATGTTTGTGAATCCAAATTTTCCTGAAGTTGCTGCTTTCAAGACTAAGATTCAGAATACTGACAATGAACTTAGTCAGTCGTTGACTCAATTGGCTGGTCCTGTGGTTCTATCTGCTGAAGAGGAATTTCTCCAGATTTTAGAATTCAAATCAATTGCTGATCTGAAGGAAATGGAGCAGAATGGTGTTTACTGCACTATTGGGACTGTTAAAGATATTGAATCTGAGTACAACTGGTGGTATCGTGCGTGCAAAAAATGCTCATGTGGAATGAAATTTGATGGGAAAATGTTTTACTGTAAGCATTGTGATGTTCATTATTCTTCTTTTGACACAAGGTATTCAATCCAAGTGAGGATTGTTGATGAGACTGATTCTGCTTCGTTCATGATTTTTGACAAAGAGGCTTCCAATTTTCTGGATCTTTCTGCAGCTGAACTTCGTATGGCATATGTTGCAAGGGGTGGGGACAAAAACAATCATCCAAAAGAGATTGATGCTTTCAAAGAAAAGAAATTTTTGCTCAAAGTGAACATTAAGATGCAAAATCAGTTTTCAGTTCTTCCAAATATCATTAAGGTCGTCAGATTGTGCTATGATGAGAATTTGATAAATGCTTTTATCCGGAAGTATAAGACTGAGGAAGTTGGTTTCATGGTGGACAATTCGGAAGTTATGAATCAATTCATTGAATCAAATGATGTTATTAAGGACAACAACACACCTTTCCTGGATAATGCTGGCGGTGTGGATTGTAGTTTTAAGACTCCTGAGTCTAAAATTGCAGAAAACACAATTACATCAATCTCCATTTTGGAAGAAATTCAATCAACGAAAGCTTTTGATAATGATTCTTCTTTTAAAAAGGTTCTTCCATTACCAGATGATGATGAGATGTCTACAAATAAAATTGGTTTCATGGTGGACAATTCGGAACTTGTAACTCAATTCGCTGAATCAAATGATGTTATTAAGGACAACAACACACTAGGCCTGGATAAGTGTTCTAAGTCATCATCCATTGTGGAAGAAATTCAATCAATGAAAGCTTCTGAGAATGATTCTTCTTTGAAAAAGGTCCTTCCATTGCCAGATGATGCTGAGATGTCTGCAAAGAAAATGAGGAAGATCATTAAACAAGAGAAGCCTTGA 1845 0.3583 MASRYDLVKDVNVGSNHKIWRIKVRVIRLWRSANFRDNNNNSKPMIEMVVVDEKGDQIQCTVKSFHVYLFERNILEGNVYMISNLSVALNAANFKPSFHEFRMFFKRETEVRLIEDSTIPNNVFSFFPFKDILNEELEDRHLVDVIGLLSGKGDLIEFKRNGKICNYVVLELDDFEGGNKLRCTLWEDFAHDFLRQLDEDKSNVFVIVLQFAKMKFFKGSMRVSSNTYNTKMFVNPNFPEVAAFKTKIQNTDNELSQSLTQLAGPVVLSAEEEFLQILEFKSIADLKEMEQNGVYCTIGTVKDIESEYNWWYRACKKCSCGMKFDGKMFYCKHCDVHYSSFDTRYSIQVRIVDETDSASFMIFDKEASNFLDLSAAELRMAYVARGGDKNNHPKEIDAFKEKKFLLKVNIKMQNQFSVLPNIIKVVRLCYDENLINAFIRKYKTEEVGFMVDNSEVMNQFIESNDVIKDNNTPFLDNAGGVDCSFKTPESKIAENTITSISILEEIQSTKAFDNDSSFKKVLPLPDDDEMSTNKIGFMVDNSELVTQFAESNDVIKDNNTLGLDKCSKSSSIVEEIQSMKASENDSSLKKVLPLPDDAEMSAKKMRKIIKQEKP. 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02375 614 Gene3D - 269 438 IPR012340 -
Seca1g02375 614 Pfam Domain of unknown function DUF223 47 138 IPR003871 -
Seca1g02375 614 SUPERFAMILY Nucleic acid-binding proteins 124 248 IPR012340 -
Seca1g02375 614 PANTHER OS03G0429900 PROTEIN 8 417 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca1g02375 614 Gene3D - 118 258 IPR012340 -
Seca1g02375 614 Pfam Replication factor-A C terminal domain 297 414 IPR013955 -
Seca1g02375 614 CDD RPA1_DBD_A_like 21 111 - -
Seca1g02375 614 ProSitePatterns Zinc finger C2H2 type domain signature. 315 337 IPR013087 -
Seca1g02375 614 CDD RPA1_DBD_C 283 436 IPR047192 -
Seca1g02375 614 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Seca1g02375 614 CDD RPA1_DBD_B_like 144 246 - -
Seca1g02375 614 Gene3D - 8 117 IPR012340 -
Seca1g02375 614 SUPERFAMILY Nucleic acid-binding proteins 278 416 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02375 Seca-Chr1 58187016 58190234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02375 20 378 Core DNA Replication Machinery Family AT2G06510 25.946 1.31e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02375 - - adu:107477146 437.187