Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02374 ATGGATGCTATGAGTTGCTCATCAAGTTCTCATGTTCTTCGCTTCTTCGTAGCTATTATTTGCCGAATGAGGGAATTTTTGATAAAAATTCGCAGTGAATCTATGTCAGAGATTGGTTACCCAGATTTCCTTAGTCCCCTTTTTGTTAACCAATCTGAAGCTAATTGTTATTCTGAAGAAGTGTTCCCATCTAGGTGTTGGAATGTTAGACTCACTGACGCTATTGTTTCCGGAGAGAAACTCATGTTAAACTCTTCAGATATCGTTTACTTTTATTCAATGGCTTCTGGGTCATCTTCATCCACTTCTTTCTTTAGATGGTTTTTTATGGAGTATGTTCCTGGAAAGAAAATTGCTAAGCTTCCTCGATTGTTTTGTATGGATCATTTGAATAATGTTAGCAAAAATGTTTTATTCCGAGACCCTGTTAACAATATTTTCCATATTGCTGTTCTTAAGACTGATGATGATCTTTATTTTACTCATGGGTGGTCGCTTTTAAGGGATGTGTTCCATTTGGAAAATGGTGCATGGATGAAATTTTACTTCTTCGATGAGAGTGAATTTTTTGTAAGGGTTTTTGATAGGAATATGGTTGAGTTCAACTATCCGGTGCCTTCAAATGTATATCACCGTGGGGTAGGTGATTCCCCTGACTTAACTGTTCCTTCTGCTTCCTGGTCTTGGGATTTCCATCATGCTTCAATTGACAAGGTTCTTTCTGGAAAGCAAGTGTCTTCAAACAGGATGACTATGCCTGCTGTGTTTTGTAAATGCCTTCCCTTGAATGCATCAAATATTGTTCTAAGAGATGAAAATAGAACTGAATTTCAATGCCGTTTCAGGAGGGCTCCCAGAAGACGCAATGAGGGTTATATCACAAATGGGTGGCAAGAGTTTTGTAGTGCTAGAGGATTAAGTGGTGGTTGTGTAGTTCTTTTTAGTGTTAGTTCAGAGTCTATTAGGTTTGTTCAAGTACGATACAAGTGGATTATTGTGGAGTTTGATAATACATCTGACCACGCAGGGGCTCCATACATGTTTGCTCGTGATTTTTGTGAAGAAGTTGAAGATGTTGTTTATTTCAAAGATATAGATGGGAGAAGGATTACAATAACTGTCCAAAAAGATGAAGATCGTATTTATTTTGCAGCTGGATGGAAGGATATTGGAAATTTGTACAATCTGAAAGATGGTGGTTGGCTCAAAGTTGAATATCAGGCCTTTTCAACTAACAGTTTTCTTTTTGAAGTTTTGGACAGGAGAACGATTCGGGTTGATCATATGGAGGATTCATCAACTTCACACATGAAGAAGCCAAGGTCAGAAATGAATGTTGATCCGGAAGACCCTGAAACTTGGTATACGCCTCGGTGGCAGTATCTCGAGTATGATCCTCGAATGGGATTCTGCAGAGCTGCTTCTCAGTTTGCTAGGGACTTTTGGGACATTGTTCCTAGAAGAGTTCAATTTATTGACCGTATTGGTAATGTCATTAATGTTGTTGTTAGAAGATACGTTGTCTGTATGTATTTTACTCATGGTTGGCCTGTGCTTAAAGATGTTTATGAGCTTGACGATGGAGGATGGATAAAACTTTATTATCAGGACAAAAATGTTTTCAAAATTTCCGTATATGATAGGGATTTTTATGAAGCTCCTTTGCCTATTCCTCCTAAGGAATATGATCATTCTATAACTTTCCTTCCTAAGGATGTTATTCCTGAATATCGTGAAAGTGATCTTCATGATGTGCATCATTTTGATAAAACAATGACCGAATTGCAGGCTAAGGGTAACATACTGAACCTTCCTACTGCACTTTGTGAAAGGTTTAGAACAAAGATTAACTCTGCTGTTTTGAGGGACGATAATGGTGTTGTGTTTCCTGTCAAATTGTCTTGGTCAAAGTCTGGAAAGGTTGCATTTGTCACAAAGGGATGGAAGGAGTTTACTATTTAG 1962 0.3797 MDAMSCSSSSHVLRFFVAIICRMREFLIKIRSESMSEIGYPDFLSPLFVNQSEANCYSEEVFPSRCWNVRLTDAIVSGEKLMLNSSDIVYFYSMASGSSSSTSFFRWFFMEYVPGKKIAKLPRLFCMDHLNNVSKNVLFRDPVNNIFHIAVLKTDDDLYFTHGWSLLRDVFHLENGAWMKFYFFDESEFFVRVFDRNMVEFNYPVPSNVYHRGVGDSPDLTVPSASWSWDFHHASIDKVLSGKQVSSNRMTMPAVFCKCLPLNASNIVLRDENRTEFQCRFRRAPRRRNEGYITNGWQEFCSARGLSGGCVVLFSVSSESIRFVQVRYKWIIVEFDNTSDHAGAPYMFARDFCEEVEDVVYFKDIDGRRITITVQKDEDRIYFAAGWKDIGNLYNLKDGGWLKVEYQAFSTNSFLFEVLDRRTIRVDHMEDSSTSHMKKPRSEMNVDPEDPETWYTPRWQYLEYDPRMGFCRAASQFARDFWDIVPRRVQFIDRIGNVINVVVRRYVVCMYFTHGWPVLKDVYELDDGGWIKLYYQDKNVFKISVYDRDFYEAPLPIPPKEYDHSITFLPKDVIPEYRESDLHDVHHFDKTMTELQAKGNILNLPTALCERFRTKINSAVLRDDNGVVFPVKLSWSKSGKVAFVTKGWKEFTI. 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02374 653 PANTHER B3 DOMAIN-CONTAINING 100 315 - -
Seca1g02374 653 SUPERFAMILY DNA-binding pseudobarrel domain 584 652 IPR015300 -
Seca1g02374 653 SMART B3_2 236 330 IPR003340 GO:0003677
Seca1g02374 653 SMART B3_2 108 197 IPR003340 GO:0003677
Seca1g02374 653 SUPERFAMILY DNA-binding pseudobarrel domain 475 549 IPR015300 -
Seca1g02374 653 Gene3D - 576 653 IPR015300 -
Seca1g02374 653 Gene3D - 225 327 IPR015300 -
Seca1g02374 653 SUPERFAMILY DNA-binding pseudobarrel domain 340 407 IPR015300 -
Seca1g02374 653 SUPERFAMILY DNA-binding pseudobarrel domain 100 197 IPR015300 -
Seca1g02374 653 ProSiteProfiles B3 DNA-binding domain profile. 235 330 IPR003340 GO:0003677
Seca1g02374 653 Gene3D - 96 199 IPR015300 -
Seca1g02374 653 Gene3D - 328 423 IPR015300 -
Seca1g02374 653 SUPERFAMILY DNA-binding pseudobarrel domain 235 328 IPR015300 -
Seca1g02374 653 Pfam B3 DNA binding domain 244 323 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02374 Seca-Chr1 58179404 58185891 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca1g02374 B3 1.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02374 - K00433 tpra:123917148 68.9366