Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02365 ATGGAGCACAATGAATGTCAGGCATTTGAAATTGATGAGCCTAAAGATATTTTTTTGGGTCAAGTTGTGTATAGCAAAGATGAAGCTTATAACTTATACCAAGAACATGCATTGAAAATGGGTTTTAGTGTAAGAAGAGGGAGGGCGTTGTACTATGATAGTGAGAAAAAGAATATACGTTTGAAAGACTATTATTGTTCCAAACAGGGGTTTAAGAATAATGAACCTCAAGGTGAAGTGACTTATGAAAGAGCAGATTCAAGAACAAATTGCCAAGCTATGGTGAGATTTAACGTGAGTAAGGAAGGATTATGGAAAATTACAAAGCTGGAATTAAATCACAACCATGACTTTGTGCCACCTGAGCAAAGGCATTTGTTACGTTCTATGAGAAATATGTCAAATGCCAAAGGAGACCTCATAAAATCCATGGTGAATGCCAGTATGAGAGTTACTAATATTTGGAGTTATTTAGGAGAAGAGATGCATAATTATGTTTACTCTGAAAAGATGAAATTAATTGATGCTGGTGATGCCCAGGCTTTAGTGAACCACTTACAAAAAGAAGAATTTCAAAGCACTTGGGATGAGATGATAAATGAGTACAAACTTCATGATCATAAATGGTTGAGCAATATGTATAAAATCCGTCACAAGTGGAGCACTGCTTTTAGCAAGGATATATTCTCTGCTGGTATCAAGTCCTCTCAAAGGAGTGAAAGTACAAATAGTGTTTTGAATGAGATTGCAGGAAAAACAACAAGTCTCACACAATTCATATTGGCATTTGAGAAGATGGTAAAAAAGTGGCGGCATTTAGAGGTTGAGAAGGAATTCAAAAATAAGCAAAGTGAGCCTCCTCGCATTATAAATATTAGTGAAACTCTGCGACAAGCATCTATGATATATACTCACAAGATCTTTAAATTGTTCTTGAATGAATATCTTGATGGCACGGGTGGAAGCACTTCTATGCAGATTGGTGGGTGTGATAATGTGTCATATCATGAAGTAATTTTGAACAACATGCCTAATAAGAAATATATGGTAACATTTGACTCTTCCACTATTATGATTAATTGTAGCTGCCGCAAATTTGATTCCATGGGTATTATTTGTAGTCATTCTTTGAGAATTTACAACATTAAAGGTATTCTAAAAATACCTGATCAATACTTCTTAAAAAGATGGTCAAAAGAGGCAAGGTCCATGATTTATGAGCATACAAAAGAAGATTCTAGCTCCAGTAACATTAATTCAATGATCAATGGTGATGATGCTGATTTTGTTTATCGAAATGCTATTATGAAGTCATTTTATAATCTTGTTTTGGAAACTCAAGAACATAAAGAAGATCAAGAAATTATGTGGAAATTGCTTGATATTGGAGTTGAGCGTGTGCGACAATGTGTCGGTAAGCTCAATTTAAATTTAAATTCAGAAACCATTGATATTGAGGACAATGAGTGTGCTGCAATTTTTAATCCCCCTCTTGCAAAGACTAAAGGGATGTCTAGTGCTCGGAAGAAGGGGCATTTTGAGAAAAGGAAACGATCAACCACAAAAGCAAAGAAAGGTAGGGATTGGACAGCTTTTTAG 1599 0.3508 MEHNECQAFEIDEPKDIFLGQVVYSKDEAYNLYQEHALKMGFSVRRGRALYYDSEKKNIRLKDYYCSKQGFKNNEPQGEVTYERADSRTNCQAMVRFNVSKEGLWKITKLELNHNHDFVPPEQRHLLRSMRNMSNAKGDLIKSMVNASMRVTNIWSYLGEEMHNYVYSEKMKLIDAGDAQALVNHLQKEEFQSTWDEMINEYKLHDHKWLSNMYKIRHKWSTAFSKDIFSAGIKSSQRSESTNSVLNEIAGKTTSLTQFILAFEKMVKKWRHLEVEKEFKNKQSEPPRIINISETLRQASMIYTHKIFKLFLNEYLDGTGGSTSMQIGGCDNVSYHEVILNNMPNKKYMVTFDSSTIMINCSCRKFDSMGIICSHSLRIYNIKGILKIPDQYFLKRWSKEARSMIYEHTKEDSSSSNINSMINGDDADFVYRNAIMKSFYNLVLETQEHKEDQEIMWKLLDIGVERVRQCVGKLNLNLNSETIDIEDNECAAIFNPPLAKTKGMSSARKKGHFEKRKRSTTKAKKGRDWTAF. 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02365 532 MobiDBLite consensus disorder prediction 505 523 - -
Seca1g02365 532 ProSiteProfiles Zinc finger SWIM-type profile. 348 384 IPR007527 GO:0008270
Seca1g02365 532 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 11 151 IPR031052 GO:0006355
Seca1g02365 532 MobiDBLite consensus disorder prediction 501 532 - -
Seca1g02365 532 SMART 26again6 359 386 IPR006564 GO:0008270
Seca1g02365 532 Pfam FAR1 DNA-binding domain 32 119 IPR004330 -
Seca1g02365 532 Pfam SWIM zinc finger 354 378 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02365 Seca-Chr1 57935782 57937903 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g02365 FAR1 4.4e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02365 - - tpra:123905334 487.263