Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02323 ATGGAAACTTTGGATGGTAATTCAGACCAATACGCCACCGTTTCTTCTAATTCACCATCATCATCTTCTTCTGGAGGTGTTAATAGTAATGATAGCAATGATAATAGTAATGGAAGTGTAACCTGGTATGGGATGAGGTTACCTTCTGTTAGCCCTTTACATTCCCCACTTTCCTTTCTATTGGATTACTCTGGCATTCTTCGCTCAACCCATGATTCTGAGGATGTGATTGTTAACAATGGAGTTCCTGCTTCGGAATTACGGTCTCAGCTTCAAATGCAATCGTTTGATGATGCTCCTAATGCTTCTGCTGGGACCAGTGCAGGGGAAGTTGCAATAAGAATAATTGGAGCTGGAGAGCATGATCAGAACCAGCTTGGAGAAGTGGGGTATAATGATTGTGATGATCTGATTGGTGAGAGAGGTAGAATGCCTTCATTGAATGATGATGCTGAGGGTCATGGTGGAATTGCGGCCGGTGAGAGGGTTCCTCTAGTGTCTTCAGGTTCAGCTTCGTCGTCGTCATTGGCTGGTAGTGGACAGGTTGATGGGGATGCTGCTGGGAATGGCACAGAAAGTAACAGCAGGGATTCCTCATCCTACCAGAGGTATGATATCCAGCAGGTTGCCAAGTGGATTGAGCAGATTCTTCCTTTCTCACTATTGCTGTTGGTTGTGTTCATCCGACAACATTTACAAGAACTTGCAGGTTTCTTTGTCACAATTTGGATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTTTAAAGGGAGATAGGAAAGTCTCTGTTCTTATTGGTATCTCTTTTGCTTTCATTCTTCACGTGATGTGCATTTACTGGTGGTATAAAAATGATGACCTTTTATACCCATTAGTCATGTTTCCTCCAAGACCAACTCCCTTCTGGCATGCAGTATTCATCATCTTGGTCAATGATATATTGGTGCGGCAAGCTGCAATGGCTTTCAAGTGTTTCCTGCTTATATATTACAAAAATGGCAAAGGTCACAACTTCCGTCGGCAGGCTCAAATGTTAACTCTGGTTGAATACACGCTCCTGTTGTATCGTGCCTTGTTGCCGGCACCGGTTTGGTACCGGTTTTTCTTAAACAGGGATTATGGCAGTCTGTTTTCATCACTGACAACAGGGTTGTATTTAACTTTCAAGCTAACATCTGTTGTTGAGAAGGTCCAATGCTTCATTTCTGCCTTAAAAGCCTTATCAAGAAAGGAAATTCATTATGGAGTTTATGCCACAATGGAACAGGTTAATGCTGCTGGTGACCTATGCGCTATATGCCAGGAGAAAATGCTTGCTCCTATCTTGTTGAGCTGTAAACACATTTTCTGTGAAGAGTGTGTATCGGAGTGGTTTGAGAGAGAAAGGACTTGCCCACTATGCAGAGCATTGGTTAAACCTGCTGATCTTCGGACATTTGGAGATGGATCAACAAGTCTATTTTTCCAGCTGTTTTAA 1494 0.4264 METLDGNSDQYATVSSNSPSSSSSGGVNSNDSNDNSNGSVTWYGMRLPSVSPLHSPLSFLLDYSGILRSTHDSEDVIVNNGVPASELRSQLQMQSFDDAPNASAGTSAGEVAIRIIGAGEHDQNQLGEVGYNDCDDLIGERGRMPSLNDDAEGHGGIAAGERVPLVSSGSASSSSLAGSGQVDGDAAGNGTESNSRDSSSYQRYDIQQVAKWIEQILPFSLLLLVVFIRQHLQELAGFFVTIWISAVMFKSNEIVKKQTALKGDRKVSVLIGISFAFILHVMCIYWWYKNDDLLYPLVMFPPRPTPFWHAVFIILVNDILVRQAAMAFKCFLLIYYKNGKGHNFRRQAQMLTLVEYTLLLYRALLPAPVWYRFFLNRDYGSLFSSLTTGLYLTFKLTSVVEKVQCFISALKALSRKEIHYGVYATMEQVNAAGDLCAICQEKMLAPILLSCKHIFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF. 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02323 497 SMART ring_2 436 473 IPR001841 -
Seca1g02323 497 Pfam Zinc finger, C3HC4 type (RING finger) 434 477 - -
Seca1g02323 497 SUPERFAMILY RING/U-box 425 479 - -
Seca1g02323 497 ProSiteProfiles Zinc finger RING-type profile. 436 474 IPR001841 -
Seca1g02323 497 MobiDBLite consensus disorder prediction 168 199 - -
Seca1g02323 497 ProSitePatterns Zinc finger RING-type signature. 451 460 IPR017907 -
Seca1g02323 497 CDD RING-HC_RNFT1-like 434 474 - -
Seca1g02323 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 484 IPR013083 -
Seca1g02323 497 MobiDBLite consensus disorder prediction 1 35 - -
Seca1g02323 497 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 22 497 IPR044235 GO:0061630|GO:1904294
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02323 Seca-Chr1 56620187 56626802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02323 53 497 C3H Transcription Factor Family AT5G01960 61.454 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02323 - K22379 gmx:100784614 606.29