Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02284 ATGGAAGGAATGGATGTTCTTTGCAGTGACAAAACTGGAACTCTCACCCTTAATAAGCTTTCCGTGTACAAGAACTTGATTGAGGTGTTTCCTGCTGGCTTGGACAAGGATGCCATTGTCTTATATTCTGCCAGAGCTTCTAGGACTGAAAACCAAGATGCCATTGATGCATCAATTGTGGGAATGTTGGGTGACCCAAGGAGGTATTATGATTCACACTGTTATATGAAATAA 234 0.4145 MEGMDVLCSDKTGTLTLNKLSVYKNLIEVFPAGLDKDAIVLYSARASRTENQDAIDASIVGMLGDPRRYYDSHCYMK. 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02284 77 Gene3D - 5 19 IPR023214 -
Seca1g02284 77 PANTHER CALCIUM-TRANSPORTING ATPASE 1 68 - -
Seca1g02284 77 ProSitePatterns E1-E2 ATPases phosphorylation site. 10 16 IPR018303 -
Seca1g02284 77 FunFam Phospholipid-transporting ATPase IC 5 17 - -
Seca1g02284 77 SUPERFAMILY HAD-like 1 48 IPR036412 -
Seca1g02284 77 Gene3D - 20 68 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02284 Seca-Chr1 55602803 55603356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02284 1 67 Primary Pumps ATPases AT3G42640 80.597 1.96e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02284 K01535 - gmx:100798717 115.161