Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02273 ATGGTTAGAGTCTGGCTAACAGTGAAGTACCCTGCATGGTTTTTCTATTTATGTTCATCTTCCGCCCATGATTTAAAACCCCATCATCTTGGCATAGGTTTACTTGTTTTGGGTTCATTGATTTGGCTTTGTTTCGTTTCCACCAACTCAAACATGCTTGACACCCAAAGCTACCTCGTATTGTTCCTCTTATGGTTCATATCAACTATTTTCATTAGATCCATCTTCAAAAAATCTCAGTGTTATAAACTACCCCCTGGTCCTCCAATATCTTTCCCGCTAGTTGGACATGCTCCCTATCTCCGATCACTCCTTCATTTAGCACTCTATAAGCTTTCCGTCCGATATGGGCCCTTGATGCATGTCTTGATTGGTTCCAAACATGTCATAGTTGCTTCATCTGCTGAAATGGCAAAGCAAATCCTCAAGACTTATGAAGAGTCCTTTTGCAATCGTCCTATAATGATTGCAAGTGAGAATTTGACTTATGGTGCTGCTGATTACTTCTTCATTCCTTATGGAACATACTGGAGGTTCTTGAAGAAGCTCTGCATGACTGAGCTTCTGAGTGGGAAAACTCTGGAACATTTTGTCAACATTCGTGAGGATGAAGTTCAGGCTTTCTTGAGAACGATTCTGCAGATAGCTAACACTGGTAAAGCAGTGGAAATGAGGCCAGAACTCATTAGGCATACCAACAACATCATTTCGAGAATGACAATGGGAAAGAAGAGTAGTGGGACCACTGATGAAGTTGGTCGATTGAGAAAGGTGATTAGGGAAATTGGAGAGCTACTTGGGGCTTTTAATCTCGGTGATATCTTTGAGTTTATGAAGCCTCTGGATCTGCAAGGATTTGGGAAGAAGAACAAGGACACACATCACAAAATGGATGAAATGATGGAGAAGGTGCTGAAAGAGCATGAAGAAATAAGGTCAAAGGAGGGTCCTGACAGTGATAGGAGGAAGGATCTTTTTGACATTTTGTTGAACTTAATTGAAGCAGATGGAGATAATAAACTCACTAGACAAAGTGCCAAAGCCTTTGCTCTGGTAGACATGTTTATTGCCGGAACAAATGGACCTGCAAGTGTGCTAGAATGGTCACTAGCAGAACTCGTAAGAAATCCACATGTTTTTAAGAAGGCTAGAGAAGAGATTGATTATGTTGTTGGCAAGGATAGGCTTGTTAAGGAGTCAGATATTCCCAATTTACCTTATCTCCAAGCAGTGGTTAAGGAAACTCTGAGGCTGCACCCACCAACCCCAATATTTGCGAGAGAAGCTATTAGAAGCTGCCAAGTTGATGGCTATGATATTCCTGAACATTCAAAGATTTTAATCAATGCATGGGCCATTGGTAGGGACCCAAACTACTGGGACAACCCACTAGTGTATAACCCTGAGAGGTTCTTATTCACAGATGAACCTGGTAAGAGCAAAATTGATGTTAGGGGGCAATATTACCAACTCTTACCATTTGGCAGTGGAAGAAGAAGCTGCCCTGGAGCTTCACTTGCATTATTGGTTATCCAAGGAACACTGGCAAGTTTGATTCAATGCTATGATTGGGTTGTTAATGATGGAAAGAATAATGACATTGACATGTCAGAGGAAGGAAGAGTAACTGTGTTTTTGGCGAAGCCACTGAAGTGCAAGCCTGTTCCCCGTTTTGTTCCATTCTGTGCCTGA 1692 0.4173 MVRVWLTVKYPAWFFYLCSSSAHDLKPHHLGIGLLVLGSLIWLCFVSTNSNMLDTQSYLVLFLLWFISTIFIRSIFKKSQCYKLPPGPPISFPLVGHAPYLRSLLHLALYKLSVRYGPLMHVLIGSKHVIVASSAEMAKQILKTYEESFCNRPIMIASENLTYGAADYFFIPYGTYWRFLKKLCMTELLSGKTLEHFVNIREDEVQAFLRTILQIANTGKAVEMRPELIRHTNNIISRMTMGKKSSGTTDEVGRLRKVIREIGELLGAFNLGDIFEFMKPLDLQGFGKKNKDTHHKMDEMMEKVLKEHEEIRSKEGPDSDRRKDLFDILLNLIEADGDNKLTRQSAKAFALVDMFIAGTNGPASVLEWSLAELVRNPHVFKKAREEIDYVVGKDRLVKESDIPNLPYLQAVVKETLRLHPPTPIFAREAIRSCQVDGYDIPEHSKILINAWAIGRDPNYWDNPLVYNPERFLFTDEPGKSKIDVRGQYYQLLPFGSGRRSCPGASLALLVIQGTLASLIQCYDWVVNDGKNNDIDMSEEGRVTVFLAKPLKCKPVPRFVPFCA. 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02273 563 CDD CYP93 117 554 - -
Seca1g02273 563 SUPERFAMILY Cytochrome P450 85 557 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 PRINTS E-class P450 group I signature 137 158 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 PRINTS E-class P450 group I signature 346 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 PRINTS E-class P450 group I signature 366 392 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 PRINTS E-class P450 group I signature 113 132 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 PRINTS E-class P450 group I signature 501 524 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 PRINTS E-class P450 group I signature 409 427 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 PRINTS E-class P450 group I signature 491 501 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 PRINTS E-class P450 group I signature 231 249 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 PRINTS E-class P450 group I signature 449 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 PANTHER CYTOCHROME P450 98A9 59 557 - -
Seca1g02273 563 PRINTS P450 superfamily signature 501 512 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 PRINTS P450 superfamily signature 492 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 PRINTS P450 superfamily signature 357 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 PRINTS P450 superfamily signature 410 421 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 Gene3D Cytochrome P450 76 552 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g02273 563 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 494 503 IPR017972 GO:0005506|GO:0016705
Seca1g02273 563 FunFam Cytochrome P450 family protein 76 552 - -
Seca1g02273 563 Pfam Cytochrome P450 85 544 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02273 Seca-Chr1 55098437 55101219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02273 52 557 Cytochrome P450 AT5G06900 40.588 8.91e-132 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02273 K24188 K15814 gmx:100037459 863.988