Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02258 ATGATCATTGAGAAACAGATTAGGCAGCCAGAAGAAATGGAAGAGCTGTTGGCATGTTATCTGACTTTAAGTGCTGATGAGTATCGTGATCCCATCATCAAAGTTTTCTGCGAGGTATGGTTTTACATGAGCCAATATGGTTTGGGTATCAAATCAGACATGCAATGGTATTATTATGAATAA 183 0.377 MIIEKQIRQPEEMEELLACYLTLSADEYRDPIIKVFCEVWFYMSQYGLGIKSDMQWYYYE. 61
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02258 60 ProSiteProfiles OVATE domain profile. 1 42 IPR006458 -
Seca1g02258 60 Pfam Transcriptional repressor, ovate 1 42 IPR006458 -
Seca1g02258 60 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 44 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02258 Seca-Chr1 54768334 54768516 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca1g02258 Ovate 1.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02258 - - lja:Lj6g3v1970210.1 100.908