Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02238 ATGCTTCTAGTTGGTTTTGCTGGCTTGGTAGCTGGTGCTTGTAGTAAGGCAATTGGAGAGTTTGTCTATGTCTACACTCAGTATGACATTGAGATGGATTACATTAAAAGAGATAGTGAAACTAATAATAATGATGAAGAAGATCAAAGGGAGAAGCTTCCAAACCCATTCCAGGCTGCACTTGCATCAACACTTGCATTTTCTGTAGGTGCTTTGGTGCTACTGTTAGCTACTGTGTTTATAAGGAATCACAAGATAAGGATGGGGGTTGTTGCTGCTGTGGCTAGTTTGGCTATGTTGGTGTTTGGAGGGGTTGGAGAGTGCTTGGAAAGACTCCAGTGA 342 0.424 MLLVGFAGLVAGACSKAIGEFVYVYTQYDIEMDYIKRDSETNNNDEEDQREKLPNPFQAALASTLAFSVGALVLLLATVFIRNHKIRMGVVAAVASLAMLVFGGVGECLERLQ. 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02238 113 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 1 107 IPR008217 GO:0005384|GO:0030026
Seca1g02238 113 Pfam VIT family 1 51 IPR008217 GO:0005384|GO:0030026
Seca1g02238 113 Pfam VIT family 48 110 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02238 Seca-Chr1 53690637 53690978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02238 1 111 Nodulin-like Gene Family AT3G43660 54.955 1.47e-38 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02238 K22736 - gmx:100790996 164.081