Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02210 ATGGAGAGGGGATGTATGCTGCGCGTGGTTGATTTGGGACACGACGCGATGATAACTGAACGGCAGCGGCACGGTGGCAGAGAGGACGACAGTGGCGCGCGACGGCGGGGACTGCAACCTTACAACCCTAAGCCTCAATCGCTAACCTATAATTCATTACACATATTTGTTGGAGGACTCGACCCTAATGTCACAGATGAAGATCTTAGGCGACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCCGTAGGTAAGGGGTGTGGTTTTCTCCAATTTGCAAATAGGTATACTACACAGGAACCTTTTAGCATCATTTAA 327 0.4862 MERGCMLRVVDLGHDAMITERQRHGGREDDSGARRRGLQPYNPKPQSLTYNSLHIFVGGLDPNVTDEDLRRPFSQYGEIVSVKIPVGKGCGFLQFANRYTTQEPFSII. 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02210 108 MobiDBLite consensus disorder prediction 18 46 - -
Seca1g02210 108 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 108 IPR000504 GO:0003723
Seca1g02210 108 MobiDBLite consensus disorder prediction 18 35 - -
Seca1g02210 108 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 99 IPR000504 GO:0003723
Seca1g02210 108 Gene3D - 14 103 IPR012677 -
Seca1g02210 108 PANTHER RNA PROCESSING PROTEIN LD23810P 20 98 - -
Seca1g02210 108 SUPERFAMILY RNA-binding domain, RBD 47 98 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02210 Seca-Chr1 52453686 52454845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02210 42 106 Eukaryotic Initiation Factors Gene Family AT4G34110 35.714 9.63e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02210 - - csv:101211504 94.3597