Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca1g02201 | ATGGAAGGTCGCCGGAGGATAACGCTTTATGATCAAATGTCAGCTTCGGAGAACAGCCGAGAGAGGCTAGCCGGCTTGACACTTGACGACGTCTTAGCCAATCAGAAGAGACCATCCCCAAGCCAACAACCTCCCAAGAGCCGAACCCTTCTTGACATCATCAAAGAAGACGAAAGCAACAAAAAGGACCGAAGATCTTGGAAAGCGTTCAAGGACAAGCTTCGGCTAAAGCGTGCTGGTTCTGCTTGGACATCTTCAGTTCATATTCCAACTTCGGATATCCCTATTCCTAACCCAAACAGCAGAAGCTTCACCCAGTTAGGTCGTCGCAACTCGGTCCGACTCCAGACTCACTCCAACTCGGACATGTCAACTCACTACATGACTCACCAAGTAGATAATCTCGACCCGACGGCGACAGAGGGCTCCGATTCACCGGCCACGGCGCCGGAAATGAAGCCGCAGTTCACTCGCCGGAGCTCCACCCGTTTCGCCGCCGACTCCTCCGAAAACGCCGGACCCGGGGGTCTCCGGCCGCAGCTTTCGCGGCGGAACTCCACCACCATGCAAACGGAGCCGTACCGGCGGGGGCGCGTGGTGACATTCCGAGACAGTTTCGAGGACGATGATGACGATGACAAGCTCCCGGATGCGGGGAGGACGCTATCGGCGAGGGAGGCAGTGGCGGCGCAGGAGGCGGCGGAAGCTGCGGCGGCGGCTGAGGCAGAGGCGGAGGAGGAGGCGGGGCGGCCTGTGACAATGTCGCTGATGGATTTGCTGGAAGAGACTGATAGGGAAATGGGATTGGAAGGGTCAAGGTATATATTGAGTGATGAAGAAGATTTTGATGAAGAAGAAGGGGAAGAGGAGGAGGAAGGAGAAGGTGCTATGGAGTACACTTGCTGTATTTGTATGGTGAGGCATAAAGGTTCTGCTTTTATACCTTGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTCAGTAAGGGGAATTGCCCACTCTGCAACAATTTCATTTTAGAGATTCTTGACATTTTTTGA | 1050 | 0.5419 | MEGRRRITLYDQMSASENSRERLAGLTLDDVLANQKRPSPSQQPPKSRTLLDIIKEDESNKKDRRSWKAFKDKLRLKRAGSAWTSSVHIPTSDIPIPNPNSRSFTQLGRRNSVRLQTHSNSDMSTHYMTHQVDNLDPTATEGSDSPATAPEMKPQFTRRSSTRFAADSSENAGPGGLRPQLSRRNSTTMQTEPYRRGRVVTFRDSFEDDDDDDKLPDAGRTLSAREAVAAQEAAEAAAAAEAEAEEEAGRPVTMSLMDLLEETDREMGLEGSRYILSDEEDFDEEEGEEEEEGEGAMEYTCCICMVRHKGSAFIPCGHTFCRMCSRELMVSKGNCPLCNNFILEILDIF. | 350 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca1g02201 | 349 | MobiDBLite | consensus disorder prediction | 154 | 168 | - | - | |
| Seca1g02201 | 349 | SMART | ring_2 | 301 | 338 | IPR001841 | - | |
| Seca1g02201 | 349 | ProSiteProfiles | Zinc finger RING-type profile. | 301 | 339 | IPR001841 | - | |
| Seca1g02201 | 349 | Coils | Coil | 227 | 250 | - | - | |
| Seca1g02201 | 349 | Pfam | Zinc finger, C3HC4 type (RING finger) | 299 | 342 | - | - | |
| Seca1g02201 | 349 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 276 | 349 | IPR013083 | - | |
| Seca1g02201 | 349 | MobiDBLite | consensus disorder prediction | 34 | 48 | - | - | |
| Seca1g02201 | 349 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
| Seca1g02201 | 349 | MobiDBLite | consensus disorder prediction | 134 | 218 | - | - | |
| Seca1g02201 | 349 | MobiDBLite | consensus disorder prediction | 180 | 194 | - | - | |
| Seca1g02201 | 349 | CDD | RING-HC | 299 | 338 | - | - | |
| Seca1g02201 | 349 | SUPERFAMILY | RING/U-box | 300 | 345 | - | - | |
| Seca1g02201 | 349 | MobiDBLite | consensus disorder prediction | 84 | 105 | - | - | |
| Seca1g02201 | 349 | MobiDBLite | consensus disorder prediction | 81 | 105 | - | - | |
| Seca1g02201 | 349 | PANTHER | OS01G0917900 PROTEIN | 18 | 349 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca1g02201 | Seca-Chr1 | 52049413 | 52051709 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca1g02201 | 13 | 349 | C3H Transcription Factor Family | AT3G07120 | 35.602 | 5.59e-60 | 195 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca1g02201 | - | - | gmx:100795449 | 453.366 |