Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02181 ATGATCATTTTTATAACGGAAAACAATGCACAGATTTTTTATAGCAAGTTTGTAACAAATGAATTCATCTCAATAATGGGTTTCAGAAGTTGCAGAAACTTGTCCTCTGTTTTCATCATATTTTGTTGTTATTTATTAGATGTTGTTGTTGTTGTCACGTCATCTCAAATCATCAAGGACCCTGAAACTCTAAGCTCCAACAGTGGAAACTTCACTTTGGGGTTCTTCAGCCCTCACAATTCCACAAATCGCTATGTAGGAATTTGGTGCAAATCTCAACAAAATGTGGTATGGGTGGCTAACAGAAACCAACCACTTAAGGATTCTTCCGGGGTTATTACAATATCTGATGATGGCAATCTTGTGGTGTTGAACGGACAGGAAGATGTCATTTGGTCCTCAACTGTGTCCAATATTTCATCCAATTCTAGTTTCCATCTTTCAGATTATGGTAACCTTATCTTGATGGATAACACAACAGGAAACACCATATGGGAGAGTTTCAACCATCCTTCTAATACATTATTGTCCAATATGAAACTATCAAGCAATAGAATAACAGGTGAGAAAGTACAACTTACTTCATGGAAAAGCCCTTCTAATCCATCCATTGGAAATTTCTCTCTCAGTATTGAACGCTTAAAGATTCCTGATGTGTTCATTTGGAATGAAAATCGACCATACTGGCGCAGTGGTCCTTGGAATGATCAAAATTTTCTCGGGATATGGGACATGGGAACTTATTATTTGAATGGTTATCGTGTTGAAAATAATAGGGATGGCACTGTTGATTCATATTATACACTAGATGACCTCGGAGCCATAATGTATACCCTGAATTCACAAGGACAATTCCAAGAAATTACTTGGATTGATGAGAAGGAGGAATGGCAAGTTACATGGACTAGTCAAAAATCCAATTGTGATGTTTATGGTATATGTGGGGAATTTGCAATCTGTAATCCACAAGCCTCACCAATATGCAGCTGTTTGGAAGGGTTTGAACCAAGGAACAAACAAGAATGGGATGGACAAAACTGGAATCAAGGATGCACTAGGAGGACATCTCTGCAATGTGAAAGGGCCAACAATCAAAGCACAAGTAATACAGCAGTTGGATTTCTGGAACTAAAGATGGTTAAAGTTCCTGATTTTGCTGAACCAACATCTGTTACAAAAGACACATGTAGAAGCCAGTGTTTGGAGAATTGCTCTTGCCTTGCATATTCCTATGATGCTGTTATTGGTTGTATGTCTTGGAATGGGAGTCTAATTGACATACAACAATTCCCAATGGGAGGAACTGATCTGTACATTCGTGTAGCCTCTGAAGAACTTGTTACAGGTAAAGGGCGTAACATAACAGTCATAGTCACCGTTACAGTGATAATAGGAGTCTTCATAATTGTCGCTGGTGTATATGTCATTTGCAGAAGGGCTTCACACGCAGTTGATGTCTGTCATAAACTATGGAACTCTAATAAATCAGCTAGGAAAAAAAAGAACCATACATCTTTTCGACTTAGAAAAGAAAGCACAAGTGACAAAGTATTTGGAGAACTGTCACAAGCCAAGTTACAAGAGTTAGTACAATTTAATTTTGAAAAGGTTGCAACTGCCACAAACAACTTCGACTTATCCAACAAACTTGGTCAGGGTGGTTTTGGTCCAGTATACAAGGGGGAACTACAAGATGGTAAGGAAATTGCAGTTAAAAGACTTAAAAGAACATCAGGACAAGGGTTAGAAGAATTCATGAATGAAGTAGTTGTGCTTTCTAAGCTTCAACACCGCAATTTGGTAAGGCTTCTTGGCTGTTGCATTGAAGGAGACGAGAAGATGTTGATATATGAGTACATGCCAAATAAAAGTTTGGACAGATATGTGTTTGATCAATCAAAAAATAAACTCCTGGATTGGGAGAAACGCTTCAGCATAATAGAAGGAATAGCTCGAGGATTGCTTTATCTTCATAGAGATTCAAGGCTAAAAATCATACATAGAGATTTGAAGGCAAGTAATATCTTGCTAGATGAGGAGCTGAATCCAAAAATATCAGATTTTGGTATGGCTAGAATCTTTGGAGGGAGTGAAGATCAAGCCAATACCCAAAGGGTTGTTGGAACATATGGCTATATGTCCCCTGAATATGCAATTCAAGGAGTGTTTTCAGAAAAATCTGATGTCTTTAGCTTCGGAGTTTTGCTAATAGAGATTGTTAGTGGAAGAAGAAACTCAAGGTTTCATGACAATGAAAGTTCTTTGACCCTCTTAGGATTTGCATGGATAAAATGGAGGGACGACGATATTTCGTCTTTAATAGATCCAGAAATATATGATCATAGCCTTCATAAGAATATTTTGAGGTGCATACACATAGGACTTTTATGTGTGCAAGAATCTGCTGTAGACAGGCCTACTATGGCAGCAGTAATCTCTATGCTTAACAGTGAGATTATGGACCTTCCTCCTGCAAGGGAACCTGCATTTGTCCTGAGGCAGAATATGCTGAGTTCTGTCTCCTCTGAAGAAATTATCAAATTGTATTCCATCAATGCTGTTAGTATTACAGACATCCACGGCAGATAG 2589 0.3816 MIIFITENNAQIFYSKFVTNEFISIMGFRSCRNLSSVFIIFCCYLLDVVVVVTSSQIIKDPETLSSNSGNFTLGFFSPHNSTNRYVGIWCKSQQNVVWVANRNQPLKDSSGVITISDDGNLVVLNGQEDVIWSSTVSNISSNSSFHLSDYGNLILMDNTTGNTIWESFNHPSNTLLSNMKLSSNRITGEKVQLTSWKSPSNPSIGNFSLSIERLKIPDVFIWNENRPYWRSGPWNDQNFLGIWDMGTYYLNGYRVENNRDGTVDSYYTLDDLGAIMYTLNSQGQFQEITWIDEKEEWQVTWTSQKSNCDVYGICGEFAICNPQASPICSCLEGFEPRNKQEWDGQNWNQGCTRRTSLQCERANNQSTSNTAVGFLELKMVKVPDFAEPTSVTKDTCRSQCLENCSCLAYSYDAVIGCMSWNGSLIDIQQFPMGGTDLYIRVASEELVTGKGRNITVIVTVTVIIGVFIIVAGVYVICRRASHAVDVCHKLWNSNKSARKKKNHTSFRLRKESTSDKVFGELSQAKLQELVQFNFEKVATATNNFDLSNKLGQGGFGPVYKGELQDGKEIAVKRLKRTSGQGLEEFMNEVVVLSKLQHRNLVRLLGCCIEGDEKMLIYEYMPNKSLDRYVFDQSKNKLLDWEKRFSIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFGGSEDQANTQRVVGTYGYMSPEYAIQGVFSEKSDVFSFGVLLIEIVSGRRNSRFHDNESSLTLLGFAWIKWRDDDISSLIDPEIYDHSLHKNILRCIHIGLLCVQESAVDRPTMAAVISMLNSEIMDLPPAREPAFVLRQNMLSSVSSEEIIKLYSINAVSITDIHGR. 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02181 862 SMART serkin_6 544 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02181 862 CDD B_lectin 55 171 IPR001480 -
Seca1g02181 862 Pfam S-locus glycoprotein domain 229 337 IPR000858 GO:0048544
Seca1g02181 862 Gene3D Transferase(Phosphotransferase) domain 1 620 822 - -
Seca1g02181 862 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 508 619 - -
Seca1g02181 862 Gene3D - 48 169 IPR036426 -
Seca1g02181 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 665 677 IPR008271 GO:0004672|GO:0006468
Seca1g02181 862 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 202 IPR036426 -
Seca1g02181 862 SMART ntp_6 369 441 IPR003609 -
Seca1g02181 862 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 47 168 - -
Seca1g02181 862 ProSiteProfiles Protein kinase domain profile. 544 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02181 862 ProSiteProfiles PAN/Apple domain profile. 359 442 IPR003609 -
Seca1g02181 862 Pfam PAN-like domain 372 427 IPR003609 -
Seca1g02181 862 SUPERFAMILY Protein kinase-like (PK-like) 528 815 IPR011009 -
Seca1g02181 862 CDD STKc_IRAK 550 816 - -
Seca1g02181 862 Gene3D Phosphorylase Kinase; domain 1 502 619 - -
Seca1g02181 862 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 620 823 - -
Seca1g02181 862 Pfam Protein tyrosine and serine/threonine kinase 546 813 IPR001245 GO:0004672|GO:0006468
Seca1g02181 862 CDD PAN_AP_plant 355 442 - -
Seca1g02181 862 SMART blect_4 55 171 IPR001480 -
Seca1g02181 862 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 38 806 - -
Seca1g02181 862 Pfam D-mannose binding lectin 96 197 IPR001480 -
Seca1g02181 862 ProSiteProfiles Bulb-type lectin domain profile. 49 168 IPR001480 -
Seca1g02181 862 PIRSF SRK 24 862 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02181 Seca-Chr1 50868861 50872895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02181 449 833 Receptor kinase-like Gene Family AT4G05200 50.000 2.09e-123 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca1g02181 PK_Tyr_Ser-Thr 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02181 - - gmx:100779455 1098.19