Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02180 ATGGTTAAAGTTCCTGATTTTGCTGAACCATCATCTGTTACAAAAGACACATGTAGAAGCCAGTGTTTGGAGAATTGCTCTTGCCTTGCATATTCCTATGATGCTGTTATTGGTTGTATGTCTTGGAATGGGAGTCTAATTGACATACAACAATTCCCAATGGGAGGAACTGATCTGTACATTCGTGTAGCCTCTGAAGAACTTGGTAAAGGGCGTAACATAACAGTCATAGTCACCGTTACAGTGATAATAGGAGTCTTCATAATTGTCGCTGGTGTATATGTCATTTGCAGAAGGGCTTCACACGCAGCTAGGAAAAAAAAGAACCATACATCTTTTCGACTTAGAAAAGAAAGCACAAGTGACAAAGTATTTGGAGAACTGTCACAAGCCAAGTTACAAGAGTTAGTACAATTTAATTTTGAAAAGGTTGCAACTGCCACAAACAACTTCGACTTATCCAACAAACTTGGTCAGGGTGGTTTTGGTCCAGTATACAAGGGGGAACTACAAGATGGTAAGGAAATTGCAGTTAAAAGACTTAAAAGAATATCAGGACAAGGGTTAGAAGAATTCATGAATGAAGTAGTGGTGCTTTCTAAGCTTCAACACCGCAATTTGGTAAGGCTTCTTGGCTGTTGCATTGAAGGAGACGAGAAGATGTTGATATATGAGTACATGCCAAATAAAAGTTTGGACAGATATGTGTTTGGTTAG 717 0.3891 MVKVPDFAEPSSVTKDTCRSQCLENCSCLAYSYDAVIGCMSWNGSLIDIQQFPMGGTDLYIRVASEELGKGRNITVIVTVTVIIGVFIIVAGVYVICRRASHAARKKKNHTSFRLRKESTSDKVFGELSQAKLQELVQFNFEKVATATNNFDLSNKLGQGGFGPVYKGELQDGKEIAVKRLKRISGQGLEEFMNEVVVLSKLQHRNLVRLLGCCIEGDEKMLIYEYMPNKSLDRYVFG. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02180 238 SMART ntp_6 1 63 IPR003609 -
Seca1g02180 238 ProSiteProfiles Protein kinase domain profile. 151 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02180 238 Pfam PAN-like domain 2 49 IPR003609 -
Seca1g02180 238 CDD PAN_AP_plant 1 64 - -
Seca1g02180 238 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 103 226 - -
Seca1g02180 238 SUPERFAMILY Protein kinase-like (PK-like) 132 237 IPR011009 -
Seca1g02180 238 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 2 235 - -
Seca1g02180 238 ProSiteProfiles PAN/Apple domain profile. 1 64 IPR003609 -
Seca1g02180 238 Gene3D Phosphorylase Kinase; domain 1 106 226 - -
Seca1g02180 238 Pfam Protein tyrosine and serine/threonine kinase 153 236 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02180 Seca-Chr1 50854146 50855185 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02180 66 237 Receptor kinase-like Gene Family AT4G04500 45.930 8.40e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca1g02180 PK_Tyr_Ser-Thr 6.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02180 - - gmx:100779455 311.997