Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02179 ATGATTTCTTTTAGGAAAAGGCCTTCTTCCTATAGAGACTTCCTCTCTCTCTCTAGGCCAAGCATACATAAAAACCAGAAGAAGAGGAAGAACCCTCTTGACACTCTTTTGAGTCAAGGAGATCGCGTGGCACGCGAGAGAGTGAAGGCGGCATTGAGGTTGTTCGATACTACTTGTAGAAACTACGCGAAGAAAGGGGTTCCTGGAGTACTTCAGAAAGCGACTAAGCATCTTCAAGTTAAAGGCAAGTTCGTCAACCCTGGGAAACAAATTATAGGATCCGTGCCTGGAGTTGAAGTCGGTGATGAATTCTTGTACTGGGGGGAGTTTAACGTTGTTGGCCTTCATCGCCAGATCACCCGTGGCATAGATTATGTAAATGTTAATGGCATGTTTCTCGCTACCAGCGTTGTTTCGGGAGGGATTTATGATGATGATGTGAAGGATACAAATGAGTTAGTTTATATGGGGGAGGGAGGGAATGTGATAAAGAGAAAAAGGAAACCTAAAGATCAGAAACTTACAAGGGGTAATCTTGCTTTGAAGAACAGTTTCGAGGTTAAGAATCCAGTTAGGGTGATACTCAAGTCTGGGTCAAAGGATGAAGGTTCTGATGTGTATGCTTATTATGGGCTTTATCAGGTTGATAAGTATTGGTATGAGAAATGGTTACATGGTAAATTGGTTTACAAGTTCAAATTGAAAAGAATGCCTGATCAAGGTTTGTGTGTCAATGACATTTCTTATGGGAAAGAGTTAATTCCTATATGTGCCATTAATACTGTAGATGATGAAGGGCCACCTATGTTTGAATACATGACTCACATGGTGTATCCTAATTGGTGCAACCTCATTCCTTATGTGGGTTGTGATTGTGTCGATGGATGCTCTGACTCGGTGAAATGTTCTTGTGTAGAGAGGAAGGGGGTAAAATCCCTTTCAGTTAGCCAACATGGGATTCAATTTCGGTTTGAAATATTTAAGACCAAGACAAAGGGATGGGGTGTGAGATCCCTTAATAGCATTCCTTCTGGAAGTTTTATATGTGAATATACAGGTGAGCTTATTGAATTTGAGGAAGCTAAAAATAGGGCTAATAATGATGAGTATCTGTTTGATATTGGGAATAACTATAGTGATGATACTCTCTGGGAAGAGCTTTCGGAGATTATCCCTGACATAGGCTTGAGTTCTTCTTCCCAAGTAATTGAGCATGGTAACTTCACAATTGATGCTACACATTGTGGTAATTTTGGGAGGTTTATTAACCATAGTTGCTCCCCTAATCTTTTTGCTCAAAATGTCTTTTATGATCACGATGACAACAAGATTCCTCACATAATGTTGTTTGCGGCTGACAACATTCCTCGCATGCAAGAGTTGACTTACAATTACAATTACAAGATAGATCAAGTTTGTGGTGTTGATGGCAATATAAGGAAGAAGAATTGCTATTGCGGTGCTCTGGAGTGTACTGGCAGGATGTATTGA 1491 0.4031 MISFRKRPSSYRDFLSLSRPSIHKNQKKRKNPLDTLLSQGDRVARERVKAALRLFDTTCRNYAKKGVPGVLQKATKHLQVKGKFVNPGKQIIGSVPGVEVGDEFLYWGEFNVVGLHRQITRGIDYVNVNGMFLATSVVSGGIYDDDVKDTNELVYMGEGGNVIKRKRKPKDQKLTRGNLALKNSFEVKNPVRVILKSGSKDEGSDVYAYYGLYQVDKYWYEKWLHGKLVYKFKLKRMPDQGLCVNDISYGKELIPICAINTVDDEGPPMFEYMTHMVYPNWCNLIPYVGCDCVDGCSDSVKCSCVERKGVKSLSVSQHGIQFRFEIFKTKTKGWGVRSLNSIPSGSFICEYTGELIEFEEAKNRANNDEYLFDIGNNYSDDTLWEELSEIIPDIGLSSSSQVIEHGNFTIDATHCGNFGRFINHSCSPNLFAQNVFYDHDDNKIPHIMLFAADNIPRMQELTYNYNYKIDQVCGVDGNIRKKNCYCGALECTGRMY. 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02179 496 Gene3D SET domain 242 496 IPR046341 -
Seca1g02179 496 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 24 488 - -
Seca1g02179 496 ProSiteProfiles Post-SET domain profile. 480 496 IPR003616 -
Seca1g02179 496 ProSiteProfiles YDG domain profile. 93 236 IPR003105 -
Seca1g02179 496 Pfam SET domain 333 466 IPR001214 GO:0005515
Seca1g02179 496 ProSiteProfiles SET domain profile. 322 466 IPR001214 GO:0005515
Seca1g02179 496 SMART preset_2 244 328 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca1g02179 496 SMART set_7 322 472 IPR001214 GO:0005515
Seca1g02179 496 SUPERFAMILY SET domain 230 472 IPR046341 -
Seca1g02179 496 Pfam Pre-SET motif 247 310 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca1g02179 496 SMART G9a_1 88 240 IPR003105 -
Seca1g02179 496 Gene3D - 90 241 IPR036987 -
Seca1g02179 496 SUPERFAMILY PUA domain-like 81 240 IPR015947 -
Seca1g02179 496 Pfam SAD/SRA domain 92 240 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02179 Seca-Chr1 50667762 50669398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02179 80 496 EF-hand Containing Proteins AT5G13960 36.735 2.52e-87 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca1g02179 SAD_SRA 5.8e-42 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02179 K11420 - lang:109363359 594.734