Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02177 ATGGAAAACACTACGGGAAACACCATATGGGAGAGTTTCAACCATCCTTCTAATACATTATTGCCCCATATGAAACTCACAAACAACAAAATAACAGGTGAGAAAGTAGAACTTACATCATGGAAAAGCCCTTCTAATCCATCCATTGGAAGCTTCTCTTTCAGTATTGAACGCCAAAAGATTCCTGAAATTTTCATTTGGAATGAAACTCGACCATATTGGCGGCTTGGCGCAGTGGGCTTCGGAATCGTGATCTATATCTTAAATTCAAAAGGACAACTTCAAGAAAATAATTGGAATGATGAGAAGGAGGAATGGCAAGTTACATGGACTAGTCAACAATCGAGTTGTGATGTTTATGGTATATGTGGGGAATTTGCAATTTGTAATTCAAAAGGCTCACCAATATGCAGCTGTTTGAAGGGGAGGACACCACTTCAATGTGAAAGGGCCAACAATGAAAGAACAAGTAATAAAGCAGATGGGTTTCTGGAATTAAAGATGGTCAAAGTTCCTGATTTTGCTGAACCATCATCTGTTACAAAAGACACATGTAGAAGATATTCCTATGATGCTGTTATTGGTTGTATGTCTTGGAATGGGAATCTAATTGACATACAACAATTCCCAAGTGGAGGAACTGATCTATACATTCGTTTAGCCTCCGAAGAACTTGGTAAAGGGCGTAACATAACAGTCATCGTTACAGTTACTGTTATAATAGGAATTATCATAATTGTCACCGGTGTATGTGTCATTTGGAGAAGGAAAGGTGAAAAATCTGAAGAATACTCAAGTGAGAACGTACTTGGAGAATTGTCACAAGCCAAGTTACAAGAGTTAGTACTATTTAATTTTGAAAAGGTTGCAACTGCCACAAACAACTTCCACTTATCCAACAAACTTGGTCAGGGTGGTTTTGGTCCAGTATACAAGGGGGAACTACAAGATGGTAAGGAAATAGCAGTTAAAAGACTTAGAAGAAATTCTGGACAAGGGCTAGAAGAATTCATGAATGAAGTAGTTGTGCTTTCTAAGCTTCAACACCGCAATTTAGTAAGGCTTCTAGGCTGTTGCATTGAAGGAGACGAGAAGATGTTGATATATGAGTACATGCCAAATAAAAGTTTGGACAGATATGTGTTTGATCCATCAAAAAATAAACTCTTGGATTGGGAGAAACGGTTCAGCATAATAGAAGGAATAGCTCGAGGATTGCTTTATCTTCATAGAGATTCCAGGCTAAAAATCATACATAGAGATTTGAAGGCAAGTAATATCTTGCTAGATGTGGAGCTGAATCCAAAAATTTCAGACTTTGGTATGGCCAGAATCTTTGGAGGGAGTGAAGATCAAGCCAATACCCAAAGGGTTGTTGGAACATATGGCTCCCCTGAATATGCAATTCAAGGAGTGTTTTCAGAGAAATCAGATGTCTTTAGCTTTGGAGTTTTGCTAATAGAGATTGTTAGTGGAAGACGAAACTCAAGCTTTCGTGACAACGCAAGTTCTTTGACCCTCTTAGGATTTGCATGGATAAAATGGAGGGACGACGATATTTCGTCTTTAATAGATCCAGAAATATATGATCATAGCCTTCATAAGAATATTTTGAGGTGCATACACATAGGACTTCTATGTGTGCAAGAATCTGCTGCAGACAGGCCTACTATGGCAGCAGTAATCTCTATGCTTAACAGTGAGATTATGGACCTTCCTCCTGCAAGGGAACCTGCATTTGTCCTGAGGCAGAATATGCTGAGTTCAGTCTCCTCTGAAGAAAGTATCAGATTGTATTCCATCAATGCTGTTAGTATTACAGACATCCACGGCAGATAG 1839 0.3883 MENTTGNTIWESFNHPSNTLLPHMKLTNNKITGEKVELTSWKSPSNPSIGSFSFSIERQKIPEIFIWNETRPYWRLGAVGFGIVIYILNSKGQLQENNWNDEKEEWQVTWTSQQSSCDVYGICGEFAICNSKGSPICSCLKGRTPLQCERANNERTSNKADGFLELKMVKVPDFAEPSSVTKDTCRRYSYDAVIGCMSWNGNLIDIQQFPSGGTDLYIRLASEELGKGRNITVIVTVTVIIGIIIIVTGVCVIWRRKGEKSEEYSSENVLGELSQAKLQELVLFNFEKVATATNNFHLSNKLGQGGFGPVYKGELQDGKEIAVKRLRRNSGQGLEEFMNEVVVLSKLQHRNLVRLLGCCIEGDEKMLIYEYMPNKSLDRYVFDPSKNKLLDWEKRFSIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDVELNPKISDFGMARIFGGSEDQANTQRVVGTYGSPEYAIQGVFSEKSDVFSFGVLLIEIVSGRRNSSFRDNASSLTLLGFAWIKWRDDDISSLIDPEIYDHSLHKNILRCIHIGLLCVQESAADRPTMAAVISMLNSEIMDLPPAREPAFVLRQNMLSSVSSEESIRLYSINAVSITDIHGR. 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02177 612 CDD STKc_IRAK 302 566 - -
Seca1g02177 612 Gene3D Transferase(Phosphotransferase) domain 1 372 572 - -
Seca1g02177 612 SUPERFAMILY alpha-D-mannose-specific plant lectins 3 78 IPR036426 -
Seca1g02177 612 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 588 - -
Seca1g02177 612 FunFam receptor-like serine/threonine-protein kinase SD1-8 267 371 - -
Seca1g02177 612 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 372 573 - -
Seca1g02177 612 CDD PAN_AP_plant 144 221 - -
Seca1g02177 612 SUPERFAMILY alpha-D-mannose-specific plant lectins 3 47 IPR036426 -
Seca1g02177 612 ProSiteProfiles EGF-like domain profile. 113 149 IPR000742 -
Seca1g02177 612 Pfam D-mannose binding lectin 3 42 IPR001480 -
Seca1g02177 612 Pfam S-locus glycoprotein domain 86 145 IPR000858 GO:0048544
Seca1g02177 612 Gene3D Phosphorylase Kinase; domain 1 262 371 - -
Seca1g02177 612 SUPERFAMILY Protein kinase-like (PK-like) 281 600 IPR011009 -
Seca1g02177 612 ProSiteProfiles Protein kinase domain profile. 296 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02177 612 SMART serkin_6 296 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02177 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Seca1g02177 612 Pfam Protein tyrosine and serine/threonine kinase 297 564 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02177 Seca-Chr1 50647446 50651654 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02177 244 612 Receptor kinase-like Gene Family AT4G23140 50.524 3.67e-125 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca1g02177 PK_Tyr_Ser-Thr 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02177 - - mtr:25498365 812.372