Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02174 ATGGGTTTCAGTAACAGTGCAAATTTGTTCTCTGTTTTGTTCATTCTGTGTTGTTATTTGTTACATGTTGGTATTGCCATAGACACCATCACATCATCTCAATTCATCAAGGACCCTGAAACTCTAAGCTCCAAAGATGGCAACTTTACTTTGGGGTTCTTCAGTCCTGAAGATTCTACAAATCGTTACGTTGGAATTTGGTGGAAGTCTCAATCCACAATCGTATGGGTGGCTAACAGAAACCAACCACTGAATGATTCTTCAGGGATAGTCACAATATCTGATGATGGCAATCTTGTGGTATTGAATGGACAGAAAAGAGTCATTTGGTCATCAAATGTGTCCATCACAGCATCCAACACCAGTTCCAAGTTTTCAGATTTTGGTAACCTTGTTCTTTTTGAAAGCACAAAAGGAAACATCATTTGGCAGAGTTTTCAGCAACCTTCAGATACATTACTACCCAGTATGAAACTTTCAAGCAGCAGAAGAACTGGTAAGACTGTAAAACTTACATCATGGAAAAGCCCTTCTAACCCATCAATTGGGAGATTCTCTTCTAGTCCTGTTGAACGCCTAAATATACTTGAAGTGTTCATTTGGAATGAAACTCGACCCTATTGGCGCAGTGGTCCTTGGAATGGTGGGGTTTTTACAGGAATACAAATAATGACAAGTGCGTATCTTATATATTTTCATGGTGGAGATGATGGGGAAGGAAATAATGATGTCTATTATACATTATCAAATGAGTTACAATTCGCAATCTTTAACCTGAATTCTCAAGGAATTTATCAAGAGAAACGGTGGGATGATGAGAAGAAAGAGGTGTATGTTGCATGGGCTAGCCAAGAATCAGAGTGTGATGTTTATGGCATATGTGGGGCATTTGCAATTTGTATTTCACAGAGCTCACCAATATGCAGCTGTTTGAAAGGGTTTGACCCAAAGAACAAAGAGGAATGGCATAGACAAAACTGGACAAGTGGGTGTGTTAGGAGGACACCTTTGCAGTGTGAAAGGGTGGATACAAAAACAGATGGGTTTCTGAAACTGCAAATGGTTAAAGTACCAGAGTTTGCAGAAGGGTCACCTGTTACACCAGACATGTGCAGAAGCCAATGTTTGGAGAATTGCTCTTGCAATGCATATTCTCACGATGCTGTGATTGGATGTATGACTTGGACTGGGAATCTACTTGACATACAACAATTCTCAAAAGGAGGGCTTGATCTATATGTTCGTGTACCCTATATAGAACTTGACAAAGGAACAAACACAAAAATAATCATAACAGTTGCAGTGGTAATAGGAACTGTCATAGTTGTCATTTGTGCATATATCATGTGGAGAAGAACTTCTAAGCAACCAGCTAAACTGTGGTACTCTATTAAATCAGCAAGGGAAAAGAACAGCAAAGCTTTCCTATTTTTTAATAAAGTTGGAACATCAGAAAATGACAGCTTAATTGGAGAACTGTCACAAGTTAAATTCCAGGAGCTAGTACTCTTTGATTTTGAAAAGCTTGCATCTGCCACAAACAACTTCAACTTGTCCAACAAACTTGGACAGGGTGGTTTTGGTCTGGTATACAAGGGTAAACTGCAAGACGGTCAAGAAATAGCAGTTAAACGACTTTCTAGAGCATCTGGACAAGGGCTAGAAGAATTCAAGAATGAAGTAGTGGTGATTTGTAAGCTTCAACACTGCAATCTTGTAAGGCTTCTTGGCTGCTGTATTGAAGGTGATGAAAAGATGTTGATATATGAGTACCTGCCTAACAAAAGTTTGGATGCTTTTGTCTTTGATCCATCAAAACGTAAACTCTTAGATTGGAGGATGCGTTGTAGCATAATAGAAGGAATAGCTCAAGGATTGCTCTATCTTCACAGAGATTCCAGACTAAGAATCATACACAGAGATTTGAAAGCAAGTAATATCTTGTTAGATGAGGAGTTGAATCCAAAATATCAGACTTTGGAATGGCTAGAATCTTTGGTCGGAGTGAAAATCAGGCCAACACAAACAGAATTGTTGGAACTTATGGTTATATGTCCCCTGAATATGCAATGCAAGGACTATTTTCAGAGAAATAAGATGTCTTTAGCTTTGGTGTTTTGA 2121 0.3876 MGFSNSANLFSVLFILCCYLLHVGIAIDTITSSQFIKDPETLSSKDGNFTLGFFSPEDSTNRYVGIWWKSQSTIVWVANRNQPLNDSSGIVTISDDGNLVVLNGQKRVIWSSNVSITASNTSSKFSDFGNLVLFESTKGNIIWQSFQQPSDTLLPSMKLSSSRRTGKTVKLTSWKSPSNPSIGRFSSSPVERLNILEVFIWNETRPYWRSGPWNGGVFTGIQIMTSAYLIYFHGGDDGEGNNDVYYTLSNELQFAIFNLNSQGIYQEKRWDDEKKEVYVAWASQESECDVYGICGAFAICISQSSPICSCLKGFDPKNKEEWHRQNWTSGCVRRTPLQCERVDTKTDGFLKLQMVKVPEFAEGSPVTPDMCRSQCLENCSCNAYSHDAVIGCMTWTGNLLDIQQFSKGGLDLYVRVPYIELDKGTNTKIIITVAVVIGTVIVVICAYIMWRRTSKQPAKLWYSIKSAREKNSKAFLFFNKVGTSENDSLIGELSQVKFQELVLFDFEKLASATNNFNLSNKLGQGGFGLVYKGKLQDGQEIAVKRLSRASGQGLEEFKNEVVVICKLQHCNLVRLLGCCIEGDEKMLIYEYLPNKSLDAFVFDPSKRKLLDWRMRCSIIEGIAQGLLYLHRDSRLRIIHRDLKASNILLDEELNPKYQTLEWLESLVGVKIRPTQTELLELMVICPLNMQCKDYFQRNKMSLALVF. 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02174 706 Gene3D Phosphorylase Kinase; domain 1 492 591 - -
Seca1g02174 706 Pfam Protein tyrosine and serine/threonine kinase 517 652 IPR001245 GO:0004672|GO:0006468
Seca1g02174 706 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 619 - -
Seca1g02174 706 Pfam PAN-like domain 343 402 IPR003609 -
Seca1g02174 706 CDD PAN_AP_plant 335 417 - -
Seca1g02174 706 Gene3D Transferase(Phosphotransferase) domain 1 592 664 - -
Seca1g02174 706 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Seca1g02174 706 CDD B_lectin 33 149 IPR001480 -
Seca1g02174 706 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
Seca1g02174 706 Pfam D-mannose binding lectin 73 175 IPR001480 -
Seca1g02174 706 PIRSF SRK 3 657 IPR024171 GO:0004674
Seca1g02174 706 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 483 591 - -
Seca1g02174 706 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 180 IPR036426 -
Seca1g02174 706 SMART blect_4 33 149 IPR001480 -
Seca1g02174 706 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Seca1g02174 706 SUPERFAMILY Protein kinase-like (PK-like) 499 656 IPR011009 -
Seca1g02174 706 Gene3D - 22 147 IPR036426 -
Seca1g02174 706 ProSiteProfiles PAN/Apple domain profile. 339 417 IPR003609 -
Seca1g02174 706 Pfam S-locus glycoprotein domain 208 318 IPR000858 GO:0048544
Seca1g02174 706 SMART ntp_6 344 416 IPR003609 -
Seca1g02174 706 SMART serkin_6 516 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02174 706 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Seca1g02174 706 ProSiteProfiles Protein kinase domain profile. 516 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02174 706 FunFam Os07g0541700 protein 592 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02174 Seca-Chr1 50610954 50615090 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02174 429 670 Receptor kinase-like Gene Family AT4G23190 48.760 3.17e-66 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca1g02174 PK_Tyr_Ser-Thr 3.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02174 - - mtr:25498365 1011.52