Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02173 ATGGGTTTCAGAAGCTGCAGAAGCTTGTCCTCTGTTTTCATCATATCATGTTATTTATTAGGTGTTGTTGTTTTCACGTCATCTCAAATCATCAAGGACCCTGAAACTCTAAGCTCAAACAGTGGAAACTTCACGTTGGGGTTCTTCAGCCCTCAAAATTCTACAAATCGTTATGTAGGAATTTGGTACAAATCTCAACAAACTGTGGTGTGGGTAGCTAACAGAAACCAACCACTGAATGATTCTTCCGGGGTTATTACAATATCTGATGATGGCAATCTTGTGGTGTTGAACGGACAGAAAGATGTCATTTGGTCCTCAAATGTGTCCAATATTGCATCCAATTCTAGTTTCCAACTTTCATATTATGGAAGCCTTGTCTTGATGGAAAACACAACAGGAAGAACCATATGGGAGAGTTTCAACAATCCTTCCAATACATATTTGCCCCATATGAAACTTAAAAGCAATAGAATAACAGGTGAGAAAGTACAACTTACTTCATGGAAAAGTCCTTCTAATCCATCCATTGGAAGCTTCTCTTTCAGTGTTGAACGCCTAAACATTCCTGAAATTTTCATTTGGAATGAAACTCGACCGTATTGGCGCAGTGGTCCGTGGAATGGTCAAATCTTTCTAGGGGTATGGGACATGGGAGCTTCTTATATGAACGGTTTTCGTTTGGAAAATGATAGGGACGGAACTGTTGATTCATATTTTACAGTAGATGACATCGGACTCGTGATCCTTATCTTGAATTCAAAAGGCCAAATTCTACAAAATGCTTGGATTGACGAAAAGGAGGAATGGCAAGTCACATGGACTAGTCAACAATCCAATTGTGATGTTTATGGTATATGTGGGGAATTTGCTATCTGTAACTCACAAGCCACACCAATATGCAGCTGTTTGGAAGGTTTTGAACCAAGGAACAAACAAGAATGGAATGGACAAAACTGGACTGGTGGATGCATTAGGAGGACACCGCTTCAATGTGAAAGGGCCAACAATGAAAGCACAAGTAATAAAGCAGATGGGTTTCTGGAATTACAGATGGTCAAAGTTCCTGATTTTGCTGAACCGTCATCTGTTACACAAGACACGTGTAGAAGCCAGTGTTTGGAGAGTTGCTCTTGCTTTGCATATTCCTATGATGCTGTTATTGGTTGTATGTCTTGGAATGGGAGTCTAATTGACATACAACAATTCCCAAGTGGAGGAACTGATCTATACATACGTGTAGCCTCTGAAGAACTTGGTATGCTAGGTGGTAAAGGGCGTAACATAACAGTCATCATTACAGTTACTGTGATAATAGGAATTATCATAATTGTCACTGGTGTATGTGTTATTTGGAGAAGGGCTTCACACCCAGCTAAACTATGTTACTCTAATAAATCAGGGAGGACCAGAAAGATCCGTAGATTTTTACGACTTAACAAAGGTGAAAAATCTGAAGAATACTCAAGTGAGAACGTACTTGGAGAATTGTCACAAGCCAAGTTACAAGAGTTAGTACTATTTAATTTTGAAAAGGTTGCAACTGCCACAAACAACTTCCACCTATCCAACAAACTTGGGCAGGGAGGTTTTGGTCCAGTATACAAGGGGGAACTACAAGATGGTAAGGAAATTGCAGTTAAAAGACTTAAAAGAGCATCAGGACAAGGGTTAGAAGAATTCATGAATGAAGTAGTAGTGCTTTCTAAGCTTCAACACCGCAATCTTGTAAGGCTTCTAGGCTGTTGCATTGAAGGAGACGAGAAGATGTTGATATATGAGTACATGCGAAATAAAAGTTTGGATGGATATGTGTTTGATCCATCAAAAAATAAACTCCTGGATTGGGAAAAACGCTTTAGCATAATAGAAGGAATAGCTAGAGGATTGCTTTATCTTCATAGAGATTCCAGGCTAAAAATCATACATAGAGATTTGAAGGCAAGTAATATCTTGCTAGATGAGGAGCTGAATCCAAAAATTTCAGACTTTGGTATGGCCAGAATCTTTGGAGGGAGTGAAGATCAAGCCAATACCCAAAGGGTCGTTGGAACATATGGCTATATGTCCCCTGAATATGCAATTCAAGGAGTGTTTTCAGAAAAATCTGATGTCTTTAGCTTTGGAGTTTTGCTAATAGAGATTGTTAGTGGAAGACGAAACTCAAGCTTTCATTACACTGAAAGTGCTCTGACCCTCTTAGGATTTGCTTGGATGAAATGGAGGGACGACGATATTTCATCTTTAATAGATCCAGAAATATATGATCACAGCCTTCACAAGAATATTTTGAGGTGCATACACATAGGACTTTTATGTGTGCAAGAATCTGCTGCGGACAGGCCTACTATGGCTGCAGTAATTTCTATGCTTAACAGTGAGATTATGGACCTTCCTCCTGCAAGGGAACCTGCATTTGTCCTGAGGCAGAATATGCTGAGTTCAGTGTCCTCCGAAGAATTGTACTCCATCAACACTGTCAGTATTACAGACATCCAAGCCAGATAG 2508 0.3963 MGFRSCRSLSSVFIISCYLLGVVVFTSSQIIKDPETLSSNSGNFTLGFFSPQNSTNRYVGIWYKSQQTVVWVANRNQPLNDSSGVITISDDGNLVVLNGQKDVIWSSNVSNIASNSSFQLSYYGSLVLMENTTGRTIWESFNNPSNTYLPHMKLKSNRITGEKVQLTSWKSPSNPSIGSFSFSVERLNIPEIFIWNETRPYWRSGPWNGQIFLGVWDMGASYMNGFRLENDRDGTVDSYFTVDDIGLVILILNSKGQILQNAWIDEKEEWQVTWTSQQSNCDVYGICGEFAICNSQATPICSCLEGFEPRNKQEWNGQNWTGGCIRRTPLQCERANNESTSNKADGFLELQMVKVPDFAEPSSVTQDTCRSQCLESCSCFAYSYDAVIGCMSWNGSLIDIQQFPSGGTDLYIRVASEELGMLGGKGRNITVIITVTVIIGIIIIVTGVCVIWRRASHPAKLCYSNKSGRTRKIRRFLRLNKGEKSEEYSSENVLGELSQAKLQELVLFNFEKVATATNNFHLSNKLGQGGFGPVYKGELQDGKEIAVKRLKRASGQGLEEFMNEVVVLSKLQHRNLVRLLGCCIEGDEKMLIYEYMRNKSLDGYVFDPSKNKLLDWEKRFSIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFGGSEDQANTQRVVGTYGYMSPEYAIQGVFSEKSDVFSFGVLLIEIVSGRRNSSFHYTESALTLLGFAWMKWRDDDISSLIDPEIYDHSLHKNILRCIHIGLLCVQESAADRPTMAAVISMLNSEIMDLPPAREPAFVLRQNMLSSVSSEELYSINTVSITDIQAR. 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02173 835 ProSiteProfiles Bulb-type lectin domain profile. 22 141 IPR001480 -
Seca1g02173 835 ProSiteProfiles PAN/Apple domain profile. 332 415 IPR003609 -
Seca1g02173 835 Pfam Domain of unknown function (DUF3403) 793 835 IPR021820 GO:0004674
Seca1g02173 835 Pfam S-locus glycoprotein domain 202 310 IPR000858 GO:0048544
Seca1g02173 835 SMART ntp_6 342 414 IPR003609 -
Seca1g02173 835 CDD B_lectin 28 144 IPR001480 -
Seca1g02173 835 SMART serkin_6 520 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02173 835 Gene3D Transferase(Phosphotransferase) domain 1 596 798 - -
Seca1g02173 835 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 209 IPR036426 -
Seca1g02173 835 SMART blect_4 28 144 IPR001480 -
Seca1g02173 835 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 782 - -
Seca1g02173 835 ProSiteProfiles Protein kinase domain profile. 520 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02173 835 FunFam receptor-like serine/threonine-protein kinase SD1-8 491 595 - -
Seca1g02173 835 CDD PAN_AP_plant 328 415 - -
Seca1g02173 835 Gene3D - 24 142 IPR036426 -
Seca1g02173 835 Gene3D Phosphorylase Kinase; domain 1 480 595 - -
Seca1g02173 835 CDD STKc_IRAK 526 792 - -
Seca1g02173 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 596 799 - -
Seca1g02173 835 Pfam D-mannose binding lectin 68 170 IPR001480 -
Seca1g02173 835 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 141 - -
Seca1g02173 835 Pfam PAN-like domain 342 400 IPR003609 -
Seca1g02173 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Seca1g02173 835 Pfam Protein tyrosine and serine/threonine kinase 521 790 IPR001245 GO:0004672|GO:0006468
Seca1g02173 835 SUPERFAMILY Protein kinase-like (PK-like) 504 791 IPR011009 -
Seca1g02173 835 PIRSF SRK 4 835 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02173 Seca-Chr1 50606479 50610346 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02173 424 835 Receptor kinase-like Gene Family AT4G21410 49.289 3.39e-122 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca1g02173 PK_Tyr_Ser-Thr 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02173 - - gsj:114424251 1112.44