Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02172 ATGGAATTTAACAAGGACTTTATGGATGGTTGTTCTACATTTTGGACTAATGAAAATTCTGAGAGCAATCGAGATGAGTCACCTAATGGGGATGGAAACCCGGTGGGAGACCAAGCTGGGCTGTCACGGGGCGGGAGGATGATACATGAACTAACACATGATGACATTAGACGTCTGGAGTTTGGTTCTGAGGGTGAGGCATATAGTTTTTATTCGGATTATGCCAAAGAACGAGGGTTTGCTGTGAGGAAAGATGATATTGAGCGAAATGAGAAAGGTGATATTGTTAAGCGGTATTTAGTGTGTAATAAGGAGGGAACAAGGGACAAGAAACACTTGGAGAGAAAGGACAGAGTGAGGGAGGCCAGGCCAATTACTCGTGTGCAGTGCACAGCAAGGATGCGTGTTTACTTAGATATGAGGAGTGGGAAATGGAAGGTGTCTGCATTCCACGACGATCAGAACCATGAGATAACTCCTCCAACGTATGTTCACATGATGTCAACTTATAGACGATTGACTGAATCTGATAAAGCTCAAGTTGATACCCTGCATGCAGCCGGTGTGAGAACTTGCCATATTATGAGTTTTATGATTGGACAGAAAGGGGGTCATGGTGAATTAGGTTTCTGTAAAAAGGACATGACAACAGACGATGGCAGACTGCAGGACCTATTTTGGTGTGACGGTGCAAGTCGTGTTGATTATCAGTGTTTTGGAGATGTAATAGCATTTGACACGACTTATAAGAAGAACAAATATAACAAGCCTTTGGTTATTTTTTGCGGGTACAACCACCATGGGGAGACATGTATATTTGGTTGTGCACTTGTTGCTGATGAGAAAACTAAGACTTACAAGTGGGTTCTCGAAACGTTTTTGGAAGCAATGTTTGGCAAAGAGCCCAGTGTTGTAGTCACCGATGGAGATGCAGCCATGCGAGAAGCTATCAGGGTTGTATTCCCAAGTGCAGTTCACAGACTTTGTTCATGGCACATACACCAAAATTCCTGTGAGGATGTGAAGAATTCAAAATTTCTAGAGGAATTCAAGCGCATGATTTATGGCAAATTCAAGGAGGATAGATTTCAACGGGAGTGGACAAACATGGTTGATAAATTTGGATTATCTAACAACAGGTGGGTCCAGAAAATGTATGACATGAAGAGGGCGTTAAAGGAGTACAGGCACAATGAATTGATGTCTGATTTTAAGTCATTTTATGGAGAACCTGTATTGACGACAACTCTTTTTACCATTGAGGAATGTGCCTCCAAAGTGTTCACTAGGAAAAAGTTTTGGGAAGTTAAGTCTGAGATTGAGATTGCGGCTGCCTACAATGTAGTGGATAGGGTTGAGACTGGTGAGAGTGTGAGATACGAGAAGGTTGACTTGCTAAGGGAGGGAGGTATAGGTGCTGCACGTGACTATTTATCCCTTGTTGCTAAGAAACATGTGCATGATTACAAGTCCATTATGGATGACATATATAAAGTCGCTGAAAAAATTGAGAGTCGTAATTGCCAGAGTGAAAAGAAAAATAATGGGCGGGGTCAAATTGGTGATCCAGAGGCGGTGAAGACTAAAGGCGCACCAAGGAAGAGCAGAAGGATGACGAAAGCCAGAAGGTGTTTGAACTGTAGACGGACAGGACACACGAAGAACAAATGTCCTGGATTGAGTCAACGGGATGTTTTAGGGGAAGCTGAAGACGATGAATCTTCGTGGGAGAGTGATGGTGCCATGGGAAATGATAAAGGTGGATTAAGTTGGGGTGATGATTTAACTCTCAGTCAAAGAGGATCGTCCGGTACAAGCAAAGGGAAGAGGCGGCGTGTGTCTCAATCATCCCAAACATCCTTCGATCGTGCTGAATTGCAGGGACTACATGACAAGGTTGCTGAAAGACAAGGCAAGCAAAGTAGGCGTTCAAATGGCAAGCAGAAAAATAAAGGAGTAGACGAGCAGGAGAGGAGATGA 1980 0.4338 MEFNKDFMDGCSTFWTNENSESNRDESPNGDGNPVGDQAGLSRGGRMIHELTHDDIRRLEFGSEGEAYSFYSDYAKERGFAVRKDDIERNEKGDIVKRYLVCNKEGTRDKKHLERKDRVREARPITRVQCTARMRVYLDMRSGKWKVSAFHDDQNHEITPPTYVHMMSTYRRLTESDKAQVDTLHAAGVRTCHIMSFMIGQKGGHGELGFCKKDMTTDDGRLQDLFWCDGASRVDYQCFGDVIAFDTTYKKNKYNKPLVIFCGYNHHGETCIFGCALVADEKTKTYKWVLETFLEAMFGKEPSVVVTDGDAAMREAIRVVFPSAVHRLCSWHIHQNSCEDVKNSKFLEEFKRMIYGKFKEDRFQREWTNMVDKFGLSNNRWVQKMYDMKRALKEYRHNELMSDFKSFYGEPVLTTTLFTIEECASKVFTRKKFWEVKSEIEIAAAYNVVDRVETGESVRYEKVDLLREGGIGAARDYLSLVAKKHVHDYKSIMDDIYKVAEKIESRNCQSEKKNNGRGQIGDPEAVKTKGAPRKSRRMTKARRCLNCRRTGHTKNKCPGLSQRDVLGEAEDDESSWESDGAMGNDKGGLSWGDDLTLSQRGSSGTSKGKRRRVSQSSQTSFDRAELQGLHDKVAERQGKQSRRSNGKQKNKGVDEQERR. 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02172 659 MobiDBLite consensus disorder prediction 16 43 - -
Seca1g02172 659 MobiDBLite consensus disorder prediction 595 624 - -
Seca1g02172 659 MobiDBLite consensus disorder prediction 625 659 - -
Seca1g02172 659 PANTHER OS01G0519700 PROTEIN 217 461 - -
Seca1g02172 659 SUPERFAMILY Retrovirus zinc finger-like domains 531 560 IPR036875 GO:0003676|GO:0008270
Seca1g02172 659 Pfam FAR1 DNA-binding domain 69 159 IPR004330 -
Seca1g02172 659 ProSiteProfiles Zinc finger CCHC-type profile. 542 558 IPR001878 GO:0003676|GO:0008270
Seca1g02172 659 MobiDBLite consensus disorder prediction 508 659 - -
Seca1g02172 659 Pfam MULE transposase domain 242 336 IPR018289 -
Seca1g02172 659 MobiDBLite consensus disorder prediction 532 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02172 Seca-Chr1 50602829 50605558 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g02172 MULE 2.2e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02172 - - mtr:120580627 477.248