Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02166 ATGGGTTTCACTTTCAGTAGCAGTGCAAATTTGTTCTCTGTTTTGTTCATGCTGTGTTGTTATTTGTTACATGTTGGTATTGCAATAGACACCATCACATCATCTCAATTTGTCAAGGACCCTGAGACTCTAAGCTCCAAAGATGGTAACTTTACGTTGGGGTTCTTCACCCCTGAAAATTCTACAAAACGCTACGTTGGAATTTGGTGGAAGTCTCAATCCACAATCATATGGGTGGCTAACAGAAACCAACCACTGAATGATTCTTCAGGGATTGTCACAATATCTGATGATGGCAATCTTGTGGTATTGAATGGACAGAAAAGAGTCATTTGGTCATCAAATGTGTCCATCACAGCATCCAACACCAGTTCCAAGTTTTCAGATTATGGTAACCTTGTTCTTTTGGAAAGCACAAAGGGAAACATCTTATGGCAGAGTTTTCAGCAACCTTCAGATACATTACTGCCCGGTATGAAACTTTCAAGTGACAAAAGAACAGGTCAGACAGTAAAACTTACATCATGGAAAAGCCCTTCTAATCCATCTATTGGGAGATTCTCTTCTGGTCCTGTTGAACGCCTAAGTATACTTGAAGTGTTCATTTGGAATGAAACTCGACCCTATTGGCGCAGTGGTCCTTGGAATGGTGGGGTCTTTACAGGAATACAAGTAATGACAAGACCGTATCTTAAAGGATTTCGTGGTGGAGATGATGGGGAAGGAAATATTGAAATATATTATACAAGACCAAATGAGTTAAAATTTGCAATTTTTAACCTAAATTATCAAGGCCAATTTCAGGAAAAATTGTGGGATGATGAGAAGAAAGAAGTGTATGTTGCATGGGCTAGCCAAGAATCAAAATGTGATGTTTATGGTATATGTGGGGCATTTGCAAGCTGTAATTCACATAGCTCACCAATATGCAGCTGTTTGAAAGGGTTTGAACCTAAGAAGAAAGAGGAATGGAATAGACAAAACTGGACTGGTGGATGTGTTAGGAGGACACCTTTGCAGTGTGAAAGGGTCAAAAATCAAAACAAAAGTGTGGATACAAAAGCAGATGGGTTTCTGAAATTGCAAATGGTTAAAGTACCAGATTTTGCAGAAGGGTCACCTGTTACACCAGAATTGTGCAGAAGCCAATGTTTGGAGAATTGCTCTTGCATTGCATATTCTCATGATACAGGGATAGGGTGTATGACTTGGACTAAGAATCTACTTGACATACAACAATTCTCGATTGGAGGACTTGATCTATATGTTCGTGTAGCCTACACGGAACTTGATAAAGGAACAGACACAAGAATTATCATTGCAGTTGCAGTGATAATAGGAACTGTCATAGTTTTCATTTGTGCATATATCATGTGGAGAAGAACTTCTAAGCAACCAGCTAAACTGCGACACTCTATTAAATTAGCAAGGAAAAAGAACAACAAAGCCTTCCTATTTTTTAATAAAGTTGGAACATCAGAAAATGACAGCGTAATTGGAGAACTGTCACAAGTTAAACTCCAGGAGCTAGTACTCTTTGATTTTGAGAAGCTTGCATCTGCCACAAACAACTTCCACCTGTCCAACAAACTTGGACAGGGTGGTTTTGGTCCAGTTTACAAGGGGAAACTGCAAGACGGGCAAGAAATAGCAGTGAAAAGACTTTCTAGAGCATCTGGACAAGGGCTAGAAGAATTCAAGAATGAAGTAGTGGTGATTTGTAAGCTTCAACACTACAATCTTGTAAGGCTTCTTGGCTGCTGTATTGAAGGTGATGAAAAGATGTTGATATATGAGTACCTGCCTAACAAAAGTTTGGATGCTTTTGTCTTTGATCCATCAAAAAGTAAACTCCTAGATTGGAGGATGCGTTGTAGCATAATAGAAGGAGTAGCTCGAGGATTGCTTTATCTCCATAGAGATTCCAGACTAAGGATCATACACAGAGATTTGAAGGCAAGTAACATCTTGTTAGATGAGGAGTTGAATCCAAAAATATCAGACTTTGGAATGGCTAGAATCTTTGGACGGAGTGAAAGTCAGGCTAACACAAACAGAATTGTTGGAACTTATGGTTATATGTCCCCTGAATATGCAATGCAAGGACTATTTTCAGAGAAATCAGATGTCTTTAGCTTTGGTGTTTTGATACTAGAGATTGTTAGTGGGAGAAGAAACTCAAGCTTTTATGACAATGAGTGTGCTCTGAGCCTTTTAGGATTTGCCTGGATACAATGGAGGGAAGGCAATATTTTATCTTTAATAGATCCAAGAATATATGATCCTTGTCATCATGAGCATATTTTAAGGTGCATACACATAGGACTTCTGTGTGTACAAGAACTTGCTGTAGACAGGCCCACTATGGCTGCTGTAATTTCTATGCTTAATAGTGAGGTTGCATCTCTTCCTCCTCCTAGTCAACCTGCATTCATCCTGAGGCAGAATATGTTGAATTCAGCATCATCTGAAGAAAGTCAGAGATTCTGTTCTATCAATACTGTTAGTATTACAGACATCTATGGTAGATAG 2532 0.3898 MGFTFSSSANLFSVLFMLCCYLLHVGIAIDTITSSQFVKDPETLSSKDGNFTLGFFTPENSTKRYVGIWWKSQSTIIWVANRNQPLNDSSGIVTISDDGNLVVLNGQKRVIWSSNVSITASNTSSKFSDYGNLVLLESTKGNILWQSFQQPSDTLLPGMKLSSDKRTGQTVKLTSWKSPSNPSIGRFSSGPVERLSILEVFIWNETRPYWRSGPWNGGVFTGIQVMTRPYLKGFRGGDDGEGNIEIYYTRPNELKFAIFNLNYQGQFQEKLWDDEKKEVYVAWASQESKCDVYGICGAFASCNSHSSPICSCLKGFEPKKKEEWNRQNWTGGCVRRTPLQCERVKNQNKSVDTKADGFLKLQMVKVPDFAEGSPVTPELCRSQCLENCSCIAYSHDTGIGCMTWTKNLLDIQQFSIGGLDLYVRVAYTELDKGTDTRIIIAVAVIIGTVIVFICAYIMWRRTSKQPAKLRHSIKLARKKNNKAFLFFNKVGTSENDSVIGELSQVKLQELVLFDFEKLASATNNFHLSNKLGQGGFGPVYKGKLQDGQEIAVKRLSRASGQGLEEFKNEVVVICKLQHYNLVRLLGCCIEGDEKMLIYEYLPNKSLDAFVFDPSKSKLLDWRMRCSIIEGVARGLLYLHRDSRLRIIHRDLKASNILLDEELNPKISDFGMARIFGRSESQANTNRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLILEIVSGRRNSSFYDNECALSLLGFAWIQWREGNILSLIDPRIYDPCHHEHILRCIHIGLLCVQELAVDRPTMAAVISMLNSEVASLPPPSQPAFILRQNMLNSASSEESQRFCSINTVSITDIYGR. 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02166 843 SMART blect_4 35 151 IPR001480 -
Seca1g02166 843 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 787 - -
Seca1g02166 843 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Seca1g02166 843 Pfam PAN-like domain 353 411 IPR003609 -
Seca1g02166 843 Gene3D - 24 149 IPR036426 -
Seca1g02166 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 601 804 - -
Seca1g02166 843 ProSiteProfiles Bulb-type lectin domain profile. 29 148 IPR001480 -
Seca1g02166 843 CDD STKc_IRAK 531 797 - -
Seca1g02166 843 Pfam D-mannose binding lectin 75 177 IPR001480 -
Seca1g02166 843 CDD B_lectin 35 151 IPR001480 -
Seca1g02166 843 Gene3D Transferase(Phosphotransferase) domain 1 601 803 - -
Seca1g02166 843 Gene3D Phosphorylase Kinase; domain 1 500 600 - -
Seca1g02166 843 SMART serkin_6 525 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02166 843 SMART ntp_6 353 425 IPR003609 -
Seca1g02166 843 ProSiteProfiles Protein kinase domain profile. 525 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02166 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 491 600 - -
Seca1g02166 843 Pfam Protein tyrosine and serine/threonine kinase 526 793 IPR001245 GO:0004672|GO:0006468
Seca1g02166 843 Pfam S-locus glycoprotein domain 210 319 IPR000858 GO:0048544
Seca1g02166 843 PIRSF SRK 3 843 IPR024171 GO:0004674
Seca1g02166 843 CDD PAN_AP_plant 337 426 - -
Seca1g02166 843 SUPERFAMILY Protein kinase-like (PK-like) 510 831 IPR011009 -
Seca1g02166 843 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 148 - -
Seca1g02166 843 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 182 IPR036426 -
Seca1g02166 843 ProSiteProfiles PAN/Apple domain profile. 341 426 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02166 Seca-Chr1 50052040 50055319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02166 513 843 Receptor kinase-like Gene Family AT4G11530 58.160 1.01e-128 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca1g02166 PK_Tyr_Ser-Thr 3.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02166 - - gmx:100779455 1333.55