Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02165 ATGGGTTTCAGCTGGAGCAAAAATATTTTCTCTGTTTCCATCATATTATGTTGTTATTTATTAGATGTTATTGTTGCCATAAACACCACCACATCCTTTCAAATCATCAAAGACCCTGGAACTCTAAGCTCAAATAATGGAAACTTTACCTTGGGGTTCTTCAGCCCTGAAAATTCTACAACACGCTATGTAGGAATTTGGTTCAAGTCTCAACAAACTGTGGTATGGGTGGCTAACAGAAACCAACCACTGAATGATTCTTCTGGGGTTGTTACAATATCTGATGATGGCCATCTTGTGGTGTTGAACGGAAAAAAAGAGGTAATTTGGTCATCAAACGTTGCCAATAATGCATCCAATTCTAGTTTCCATCTTTCAGATTATGGAAGCCTTGTCTTGATTGAAAACAAAACAGGAAACACCATATGGGAGAGTTTCAACCATCCTTCTAATACATTACTTCCCCATATGAAAATTACAAGCAATAAAATAACAGGTGAGAAAGTACAACTTACATCATGGAAAAGCCCTTCTAATCCATCCATTGGAAGCTTCTATGTCACTATTGAATGCCTAAAGGTTGCTCAATTGTTCGTTTGGAATGGAACAAGACCATACTGGCGTAGTGTTCCATGGAATGGTCAAGATATTATAGGGAAACCAGATATGGGAACTATGTATTTAAATGGTATTCATATTGAAAATGATAGGAACGGTCATGGGGATTGTGCATCTTTTATAGTAGATGAGTTTGGACTCTTGATCTATATGCTGAATTCACAAGGACAATTCAAGAGAATACTTGGAATGATGAGAAGGAGGAATGGCAAGTTACATGGACTAGTCAACAGTCAGATTGTGATGTATATGATGGTCAAAGTTCCTGATTTTGCAGAATGGTCATCTGTTACAATAGACACATGCAAAAGCCAGTGCTTGGAGAATTGCTTTTGCACTGCATATTCATATGATGTTGTTATGGGCTGTTTGTTTTGGATTTATGAAGGGCGAAAGAGAAACATGGCAGTCATCATTACAAGTCCATTGATAATAGGAATTTTCATAATCATCACTTGCGCGTATGTCATTTGGAGAAGAAGGACTTTGCACCTAGAAGAAAACACAAGTGATAATGTAATTGGAGAATTGTCACAAGCTAAGCTCCAGGAGCCATTACTACTTAATTTTGAAAAGCTTGCAACAGCCACTAACAACTTCCACTCATCCAACAAACTTGGTCAGGGTGGTTTTGGTCCAGTATACAAGGGGGTACTGCAAGATGGTAAGGAAATAGCAGTTAAAAGACTTTCTAGAGCATCAGGACTAGGGCTACAAGAATTCATGAATGAAGTGGTAGTGCTTTCTAAGCTTCAACACCGCAATCTTGTAAGGCTTCTAGGCTGTTGTATTGAAGGAGAGGAAAAGATGTTGATATATGAGTACATGCCAAATAAAAGTTTGGATGCATATCTCTTTGATCATTCAAAATATAAATTCTTGGATTGGAACAAACGCTTCAACATAATAGAAGGAATAGCTCGAGGACTGGTTTACCTTCATAGAGATTCAAGGCTAAAAATCATACATAGAGATTTGAAGGAAAGTAATATCTTGCTAGATGAGGAGCTGAATCCAAAAATTTCAGACTTTGGTATGGCCAGAATCTTTGGAGGGAATGAAGATCAAGCCAATACCCAAAGGGTTGTTGGGACACATGGCTATATGTCCCCTGAATATGCAATGCATGGAGTGTTTTCAGAGAAATCAGATGTCTTTAGCTTTGGAGTGTTGCTAATAGAGATTGTTAGTGGAAGAAGAAACTCGAGTTTTTATGATGGTGAAAATTCTCTGACCCTCTTAGGATTTGCTTGGATACAATGGAGGGAAGGCAATATTTCATCTTTAATAGATCCGAGAATATATGATCCTATCCTCCATAAGAATATATGTAGGTGCATACACATAGGACTTTTGTTTGTACAAGAATTTGTTGTAGACAGGCCAACTATGGCTGCAGTAATTTCTATGCTTAATAGTGAGATTGTGGATCTTCCACCTGCAAGTCAACCAGCATTCTTTATGAGGAAAAATGTGTGA 2097 0.3777 MGFSWSKNIFSVSIILCCYLLDVIVAINTTTSFQIIKDPGTLSSNNGNFTLGFFSPENSTTRYVGIWFKSQQTVVWVANRNQPLNDSSGVVTISDDGHLVVLNGKKEVIWSSNVANNASNSSFHLSDYGSLVLIENKTGNTIWESFNHPSNTLLPHMKITSNKITGEKVQLTSWKSPSNPSIGSFYVTIECLKVAQLFVWNGTRPYWRSVPWNGQDIIGKPDMGTMYLNGIHIENDRNGHGDCASFIVDEFGLLIYMLNSQGQFKRILGMMRRRNGKLHGLVNSQIVMYMMVKVPDFAEWSSVTIDTCKSQCLENCFCTAYSYDVVMGCLFWIYEGRKRNMAVIITSPLIIGIFIIITCAYVIWRRRTLHLEENTSDNVIGELSQAKLQEPLLLNFEKLATATNNFHSSNKLGQGGFGPVYKGVLQDGKEIAVKRLSRASGLGLQEFMNEVVVLSKLQHRNLVRLLGCCIEGEEKMLIYEYMPNKSLDAYLFDHSKYKFLDWNKRFNIIEGIARGLVYLHRDSRLKIIHRDLKESNILLDEELNPKISDFGMARIFGGNEDQANTQRVVGTHGYMSPEYAMHGVFSEKSDVFSFGVLLIEIVSGRRNSSFYDGENSLTLLGFAWIQWREGNISSLIDPRIYDPILHKNICRCIHIGLLFVQEFVVDRPTMAAVISMLNSEIVDLPPASQPAFFMRKNV. 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02165 698 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 110 693 - -
Seca1g02165 698 CDD STKc_IRAK 412 678 - -
Seca1g02165 698 CDD B_lectin 34 149 IPR001480 -
Seca1g02165 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Seca1g02165 698 ProSiteProfiles Protein kinase domain profile. 406 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02165 698 Gene3D - 24 147 IPR036426 -
Seca1g02165 698 SMART serkin_6 406 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02165 698 CDD PAN_AP_plant 291 335 - -
Seca1g02165 698 PIRSF SRK 265 338 IPR024171 GO:0004674
Seca1g02165 698 PIRSF SRK 334 698 IPR024171 GO:0004674
Seca1g02165 698 PIRSF SRK 3 278 IPR024171 GO:0004674
Seca1g02165 698 SMART blect_4 33 149 IPR001480 -
Seca1g02165 698 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Seca1g02165 698 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 180 IPR036426 -
Seca1g02165 698 Gene3D Transferase(Phosphotransferase) domain 1 482 683 - -
Seca1g02165 698 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 371 481 - -
Seca1g02165 698 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Seca1g02165 698 Pfam Protein tyrosine and serine/threonine kinase 408 605 IPR001245 GO:0004672|GO:0006468
Seca1g02165 698 Gene3D Phosphorylase Kinase; domain 1 369 481 - -
Seca1g02165 698 Pfam PAN-like domain 291 333 IPR003609 -
Seca1g02165 698 Pfam D-mannose binding lectin 73 175 IPR001480 -
Seca1g02165 698 SUPERFAMILY Protein kinase-like (PK-like) 392 693 IPR011009 -
Seca1g02165 698 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 482 685 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02165 Seca-Chr1 50018127 50026574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02165 335 695 Receptor kinase-like Gene Family AT4G05200 50.685 2.92e-122 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca1g02165 PK_Tyr_Ser-Thr 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02165 - - twl:120005476 739.184