Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02163 ATGAGTTTCAGCCGCTGTGTAAATTCACTCTCTGTTTTGTTCATGCTTTGTTGTTATTTGTTAGATGTTGGTATTGCCATAGACACCATCACATCATCTCAATCCATCAAGGACCCTGAAACTCTAAGCTCCAAAGATGGTAACTTCACGTTGGGGTTCTTCAGCCCTCAAAATTCTACAAATCGCTACGTTGGAATCTGGTGGAAGTCTCAATCCACAGTCGTATGGGTGGCTAACAGAAACCAACCACTGAATGATTCTTCAGGGATTGTCACAATATCTGAAGATGGCAATCTTGTAGTATTGAATGGACAGAATGGAGTCATTTGGTCATCAAATGTGTCAAATATAACATCCAATACAAGTTCCCACTTTTCAGACCTTGGTAACCTTGTCCTTATGGAAAGCAAAACAGGGAACCCCATATGGGAGAGTCTTCAGCAACCTTCAGATACATTACTTCCAGGTATGAGACTTTCAAGCAACAAAAGAACAGGTGAGAAAGTTAAACTTACATCATGGAAAAGCCCTTCTTATCCATCAATTGGGAGCTTCTCTTCCAGTGCTGTTGAACGCATAAATATACTTGATGTGTTCATTTGGAATGAAACTCGACCATACTGGCGCTCTGGTCCATGGAATTGTGGGGTTTTTACAGGGATACCTACAATGGAATTTGCGTATCTTAATGGTTTTCATGATGAAGAAGATGAAGAAGGAAATATTGCAATTTATTATACTATACCAGTTGAGTCAAAATTTTTCTTGTATAAACTGAATTCTCAAGGACAATTTGAAGAGACATTGTGCGATGATGACAAGAACGAATTGCTAGTCACATGGACTAGCAGAGAATCGGAGTGTGATGTTTATAGTATATGTGGGGCATTTGCAAGCTGTAATTCACAGAGCTCGCCAATATGTAGCTGTTTGAGAGGGTTTGAACCAAAGAACAAAGAGGAATGGAATAGAAAAAACTGGACTAGTGGGTGTGTTAGGAGGATGCCTTTGCAGTGTGAAAGGGTAAAAAATAAAAGCACAAGTTTAGTTACAAAAGAAGATGGATTTTTGAAACTGCATATGGTTAAAGTTCCAGATTTTGCAGAAGGGTCACCTGTTACACCAGACATGTGCAGAAACCAATGCTTGGAGAATTGCTCTTGTATTGCATATTCTCATGATGTTGGGATTGACTGTATGTCTTGGACTAGGGATTTACTTGACATACAACAATTCTCTAGGGGAGGACTTGATCTATATGTTCGTGTTGCCTATACAGAACTTGGTAAAGGAACAAACACAAAAAACATTATTACAGTTACAGTGACAGTAGGAACTGTCATAATTGTCATGTGTGCATATGTCATATGGAGAAGGAATTCTAAGCACTCAGCTAAACTGTGGCACTCAATTAAATCAACAAGGAGAAAAAACAAGCAAGCTTTCCTACCATTTAGTAAAGGTGGCACATCAGAATCAGAAGATTGTACAAGGGACAATGTAATTGGAGAACTGTCACAGATTAAACTCCAGGACCTATCACTATTTGATTTTGAAAAGCTTGCTACTGCCACTAACAACTTCCACTCCTCCAACAAACTGGGACAGGGTGGTTTTGGTCCTGTATACAAGGGGAAATTGCAAGACGGTCAGGAAATAACAGTGAAAAGACTTTCTAGAGCATCTGGACAAGGGCTAGAAGAATTCAAGAATGAAGTAGTGGTGATTTGTAAGCTTCAACACCGCAATCTTGTAAAACTTCTTGGCTGTTGTGTTGAAGGTGACGATAAGATGTTGATATATGAGTACATTCCAAACAAAAGTCTGGATGCTTTTATCTTCGATTCATTAAAAAGTAAACTCCTAGATTGGAGGATGCGCTATAGCATAATAGAAGGAATAGCTCGAGGATTGCTTTATCTTCACAGAGATTGCAGACTAAGAATCATACACAGAGATTTGAAAGCGAGTAATGTCTTGTTAGACGGGGAACTTAATCCAAAAATATCAGACTTTGGTACGGCTAGAATCTTTGGAGCATGTGAAGATCAGGCCAATACTAGCAGAATTGTTGGAACTTATGGTTATATGTCCCCTGAATATGCAATGCAAGGACTATTTTCAGAGAAATCAGATGTCTTTAGCTTTGGTGTTTTGATTCTAGAGATTGTTAGTGGGAGAAGAAACTCAAGTTTTTATGATAATGAGCAGGCTCTGAGCCTTTTAGGATTTGTCTGGTTAAAATGGAGGGAAGACAATATTTTATCTTTAATAGATTCAGGAATATATGATCCTAGTCATCATAAGCATATTTTAAGGTGTATACACATTGGACTGTTGTGTGTCCAAGAACTTGCTGTAGACAGGCCCACTATGGCTACAGTTATTTCTATGCTTAACAGCGAGGTTGAATTTCTTCCTCCACCAAGTCAACCTGCATTTATCCTGAGGAGAAATATGTTGAATTCAGTGTCTTCTGAAGAAGGTCATAGATTCGGTTCTATCAACACGGTCAGTATTACAGACATTTGTGGTAGATGA 2541 0.3872 MSFSRCVNSLSVLFMLCCYLLDVGIAIDTITSSQSIKDPETLSSKDGNFTLGFFSPQNSTNRYVGIWWKSQSTVVWVANRNQPLNDSSGIVTISEDGNLVVLNGQNGVIWSSNVSNITSNTSSHFSDLGNLVLMESKTGNPIWESLQQPSDTLLPGMRLSSNKRTGEKVKLTSWKSPSYPSIGSFSSSAVERINILDVFIWNETRPYWRSGPWNCGVFTGIPTMEFAYLNGFHDEEDEEGNIAIYYTIPVESKFFLYKLNSQGQFEETLCDDDKNELLVTWTSRESECDVYSICGAFASCNSQSSPICSCLRGFEPKNKEEWNRKNWTSGCVRRMPLQCERVKNKSTSLVTKEDGFLKLHMVKVPDFAEGSPVTPDMCRNQCLENCSCIAYSHDVGIDCMSWTRDLLDIQQFSRGGLDLYVRVAYTELGKGTNTKNIITVTVTVGTVIIVMCAYVIWRRNSKHSAKLWHSIKSTRRKNKQAFLPFSKGGTSESEDCTRDNVIGELSQIKLQDLSLFDFEKLATATNNFHSSNKLGQGGFGPVYKGKLQDGQEITVKRLSRASGQGLEEFKNEVVVICKLQHRNLVKLLGCCVEGDDKMLIYEYIPNKSLDAFIFDSLKSKLLDWRMRYSIIEGIARGLLYLHRDCRLRIIHRDLKASNVLLDGELNPKISDFGTARIFGACEDQANTSRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLILEIVSGRRNSSFYDNEQALSLLGFVWLKWREDNILSLIDSGIYDPSHHKHILRCIHIGLLCVQELAVDRPTMATVISMLNSEVEFLPPPSQPAFILRRNMLNSVSSEEGHRFGSINTVSITDICGR. 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02163 846 ProSiteProfiles Protein kinase domain profile. 528 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02163 846 Pfam Protein tyrosine and serine/threonine kinase 530 798 IPR001245 GO:0004672|GO:0006468
Seca1g02163 846 SMART serkin_6 528 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02163 846 PIRSF SRK 1 846 IPR024171 GO:0004674
Seca1g02163 846 SUPERFAMILY Protein kinase-like (PK-like) 513 824 IPR011009 -
Seca1g02163 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 494 603 - -
Seca1g02163 846 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Seca1g02163 846 CDD B_lectin 33 145 IPR001480 -
Seca1g02163 846 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 179 IPR036426 -
Seca1g02163 846 Pfam PAN-like domain 351 409 IPR003609 -
Seca1g02163 846 Pfam D-mannose binding lectin 73 175 IPR001480 -
Seca1g02163 846 Pfam S-locus glycoprotein domain 208 318 IPR000858 GO:0048544
Seca1g02163 846 Gene3D Transferase(Phosphotransferase) domain 1 604 805 - -
Seca1g02163 846 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 790 - -
Seca1g02163 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Seca1g02163 846 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 604 807 - -
Seca1g02163 846 ProSiteProfiles PAN/Apple domain profile. 339 424 IPR003609 -
Seca1g02163 846 SMART blect_4 33 149 IPR001480 -
Seca1g02163 846 Gene3D - 23 146 IPR036426 -
Seca1g02163 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 649 661 IPR008271 GO:0004672|GO:0006468
Seca1g02163 846 SMART ntp_6 351 423 IPR003609 -
Seca1g02163 846 Gene3D Phosphorylase Kinase; domain 1 490 603 - -
Seca1g02163 846 CDD STKc_IRAK 534 800 - -
Seca1g02163 846 CDD PAN_AP_plant 336 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02163 Seca-Chr1 49988331 49991704 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02163 426 817 Receptor kinase-like Gene Family AT4G05200 51.531 3.38e-127 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca1g02163 PK_Tyr_Ser-Thr 8.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02163 - - tpra:123892366 1249.57