Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02162 ATGCTGTGTTGTTATTTGTTAGATGTTGGTATTGCCATAGACACCATCACATCATCTCAATTCATCAAGGACCGTGAAACTCTAAGCTCCAAAGATGGTAACTTTACATTGGGGTTCTTCAGCCCTCAAAATTCTATCAAGCGCTACGTTGGAATCTGTTGGAAATCTCAATCCACAGTCATATGGGTGGCTAACAGAAACCAACCACTGAATGATTCTTCAGGGATTGTCACAATATCTGAAGATGGCAATCTTGTTGTATTGAATGGACAGAAACAAGTCGTTTGGTCATCAAATGTGTCCAACATAACATCCAATACAAGTTCCCACTTTTCAAACTTCGGTAACCTTGTCCTTATGGAAACAAAAGGAAACATCTTATGGCAGAGTCTTGAGCAACCTTCAGATACATTACTTCCCGGTATGAAACTTACAAGCAACAAAAGAACAGGTGAGAAAGTAAAACTTACATCATGGAAAACCCCTTCTAATCCATCCATTGGGAGCTTCTCTTCAGGTGTTGCAGAACACCTAAATGTACTTGAATGGTTCATTTGGAATGAAACTCGACCATACAGGCGCAGTGGTCCTTGGAATGGTGTGGTCTTTACAGGAATACAAGTAATGACGAATCCGTACCTTGATGGTTTTCATTTTGGAGATGACGGGCAAGGAAATATTGAAATCTATTATACAATATCAAATGAGATGACATTAGTAATCTATAACCTGAATTCGCTAGGCCTATCTCAAGCAAAATGGTGGGATGATGAGACGAAAGAAATGCGAGTTATATGGACTAACCATGAGTCGGAGTGTGAAGTTTATGGTACATGTGGGGCATTTGCAAGCTGTAATTCACATAGCTCACCAATATGCAGCTGTTTGAAAGGGTTTGAACCTAAGAGCAAAGAGGAATGGAGTAGACAAAACTGGACTAGTGGATGTGTTAGGAGGACACCTTTGCAGTGTGAAAGGGTCAACAATCAAAACAAAAGTGTGGATACAAAAGCAGATGGGTTTCTGAAACTGCAAATGGTTAAAGTACCAAATTTTGCAGAAGGGTCACCTCTTACACCAGAAACGTGCAGAAGCCAATGCTTGGAGAATTGCTCTTGCATTGCATATTCTCATGATGAAGGGATAGGATGTATGACTTGGATTAGGAATCTGCTTGACATACAACAATTCTCGAGTAGAGGACTTGATCTATATGTTCGTGTAGCCTATACCGAACTTGACAAAGGAACAAACAAAAAACTCATCATTACAATTACAGTGATAATAGGAACTGTCATAATTGGCATTTGTGCATATATCATGTGGAGAAGGACTCCTCAGCAGCCAGCTAAACTGTGGCACTCTATTAAATCAGCAAGGAAAAAGAACAGAAAAGCTTTTCTATTTTTTAATAAAGTTGGAACATCAGAAAATGACAACTTAATTGGAGAACTGTCACAAGTTAAATTCCAGGATCTAGTACTCTTTGATTTTGAAAAGCTTGCATCTGCCACAAACAACTTCCACTTGTCCAACAAACTTGGACAGGGTGGTTTTGGTCCAGTATATAAGGGGAAACTGCAAGACGGTCAAGAAATAGCAGTTAAACGACTTTCTAGAGCATCTGGACAAGGGCTAGAAGAATTCAAGAATGAAGTAGTGGTGATTTGTAAGCTTCAACACTGCAATCTTGTAAGGCTTCTTGGCTGCTGTATTGAAGGTGATGAAAAGATGTTGATATATGAGTACCTGCCTAACAAAAGTTTGGATGCTTTTGTCTTCGATCCATCAAAAAGTAAACTCCTAGATTGGAGGATGCGTTGTAGCATAATAGAAGGAATAGCCCGAGGATTGCTTTATCTTCACAGAGATTCCAGACTAAGAATCATACCTAGAGATTTGAAGGCAAGTAATATCTTGTTAGATGAGGAGTTGAATCCAAAAATATCAGACTTTGGAATGGCTAGAATCTTTGGACGGAGTGAAAATCAGGCCAACACAAATAGAATTGTTGGAACTTATGGCTATATGTCCCCTGAATATGCAATGCAAGGACTATTTTCAGAGAAATCAGATGTCTTCAGCTTTGGTGTTTTGATACTAGAGATTGTTAGTGGAAGAAGAAACTCAAGCTTTTATGACAATGAACATGCTCTGACTCTTTTAGGATTTGCTTGGATACTGTGGAGACAAGACAATATATTGCCTTTAATAGATCAAGGAATATATGATCCTAGTAATCATAAGCATATTTTAAGGTGCATACACATTGGACTTTTGTGTGTTCAAGTAATTTCTATGCTTAACAGTGAGGTTGCATTCCTTCCTCCTCCAAGTCAACCAGCATTCATCTTGAGGCAAAATATGTTGAGCCCAGTGTCTTCTAAAGAAAGTCATAGAGCTTGTTCAATCAATACAGTAAGCATTACGGACATTGGTGGCAGATAG 2448 0.3885 MLCCYLLDVGIAIDTITSSQFIKDRETLSSKDGNFTLGFFSPQNSIKRYVGICWKSQSTVIWVANRNQPLNDSSGIVTISEDGNLVVLNGQKQVVWSSNVSNITSNTSSHFSNFGNLVLMETKGNILWQSLEQPSDTLLPGMKLTSNKRTGEKVKLTSWKTPSNPSIGSFSSGVAEHLNVLEWFIWNETRPYRRSGPWNGVVFTGIQVMTNPYLDGFHFGDDGQGNIEIYYTISNEMTLVIYNLNSLGLSQAKWWDDETKEMRVIWTNHESECEVYGTCGAFASCNSHSSPICSCLKGFEPKSKEEWSRQNWTSGCVRRTPLQCERVNNQNKSVDTKADGFLKLQMVKVPNFAEGSPLTPETCRSQCLENCSCIAYSHDEGIGCMTWIRNLLDIQQFSSRGLDLYVRVAYTELDKGTNKKLIITITVIIGTVIIGICAYIMWRRTPQQPAKLWHSIKSARKKNRKAFLFFNKVGTSENDNLIGELSQVKFQDLVLFDFEKLASATNNFHLSNKLGQGGFGPVYKGKLQDGQEIAVKRLSRASGQGLEEFKNEVVVICKLQHCNLVRLLGCCIEGDEKMLIYEYLPNKSLDAFVFDPSKSKLLDWRMRCSIIEGIARGLLYLHRDSRLRIIPRDLKASNILLDEELNPKISDFGMARIFGRSENQANTNRIVGTYGYMSPEYAMQGLFSEKSDVFSFGVLILEIVSGRRNSSFYDNEHALTLLGFAWILWRQDNILPLIDQGIYDPSNHKHILRCIHIGLLCVQVISMLNSEVAFLPPPSQPAFILRQNMLSPVSSKESHRACSINTVSITDIGGR. 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02162 815 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 3 763 - -
Seca1g02162 815 Pfam D-mannose binding lectin 59 160 IPR001480 -
Seca1g02162 815 SMART ntp_6 336 408 IPR003609 -
Seca1g02162 815 Pfam S-locus glycoprotein domain 194 303 IPR000858 GO:0048544
Seca1g02162 815 Pfam Protein tyrosine and serine/threonine kinase 509 716 IPR001245 GO:0004672|GO:0006468
Seca1g02162 815 SMART blect_4 19 134 IPR001480 -
Seca1g02162 815 ProSiteProfiles Bulb-type lectin domain profile. 13 132 IPR001480 -
Seca1g02162 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 165 IPR036426 -
Seca1g02162 815 Gene3D - 9 131 IPR036426 -
Seca1g02162 815 CDD PAN_AP_plant 320 409 - -
Seca1g02162 815 Gene3D Transferase(Phosphotransferase) domain 1 584 770 - -
Seca1g02162 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 9 131 - -
Seca1g02162 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 584 773 - -
Seca1g02162 815 ProSiteProfiles Protein kinase domain profile. 508 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02162 815 PIRSF SRK 1 815 IPR024171 GO:0004674
Seca1g02162 815 Pfam PAN-like domain 336 394 IPR003609 -
Seca1g02162 815 ProSiteProfiles PAN/Apple domain profile. 324 409 IPR003609 -
Seca1g02162 815 Gene3D Phosphorylase Kinase; domain 1 473 583 - -
Seca1g02162 815 CDD B_lectin 19 134 IPR001480 -
Seca1g02162 815 SMART serkin_6 508 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02162 815 SUPERFAMILY Protein kinase-like (PK-like) 492 757 IPR011009 -
Seca1g02162 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 475 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02162 Seca-Chr1 49941902 49945096 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02162 414 786 Receptor kinase-like Gene Family AT4G05200 49.219 1.26e-117 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca1g02162 PK_Tyr_Ser-Thr 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02162 - - tpra:123892366 1217.6