Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02161 ATGTTTTCCATCCTTTTCTCCAACAAGGAGACGAAAGGGTGGCCATTTGGAGCAAACTGTGTTGATCTTCTTAATCTATTTATCTCAGTAATGGGTTTCAGCCGCTGTGCAAATTTGTTCTCTGTTTTGTTCATGTTCATGTTGTGTTGTTATTTGTTTGATGTTGGTATTTCCATAGACACCATCACATCATCTCAATTCATAAAGGACCCTGAAACTCTAAGCTCCAAAGATGGCAACTTTACTTTGGGGTTCTTCAGTCCTGAAGATTCTACAAATCGTTACGTTGGAATTTGGTGGAAGTCTCAATCCACAATCATATGGGTGGCTAACAGAAACCAACCACTGAATGATTCTTCAGGGATTGTCACAATATCTGAAGATGGCAATCTTGTGGTATTGAATGGACAGAAACAAGTCATTTGGTCATCAAATGTGTCCAACATAACATCCAATACAAGTTCCCACTTTTCAGACTTTGGAAACCTTGTCCTTTCGGAAAGCACAAAAGGAAACATCTTATGGCAGAGTTTTCAGCATCCTTCCAATGTAATGTTGCCCGGTATGAAACTTACAAGCAACAAAAGAACAGGTGAGAAAGTAAAACTTACATCATGGAAAAACCTTTCTAATCCATCCGTTGGGAGCTTCTCTTTAGGCATTGCTGAACATCTAAACATACCTGAATTTTTCATTTGGAATGAAACTCGACCGTACTGGCGCAGTGGTCCGTGGAATGGTGTGTTCTTTACAGGAATACAAGAAATGACGACTTCTAGTGGTTTTCATTTTGGAGATGATGGGCGAGGAAATATTGATGTTTATTATACAATATCAAATGAGGTGACATTCGTAATCTATAACCTGAATTCCCAAGGCATATCTCAAGCAAAATGGTGGTATGATGATAAGAAAGAAATGCTAGTTATATGGACTAGCCATGAGACAGGGTGTGAAGTTTATGGTATATGTGGGGCATTTGCAAGTTGTAATTTAAATAGATCACGCTCACCAATATGCAGCTGTTTGAAAGGGTTTGAACCTAAGAACAAAGAGGAATGGAGTAGACAAAACTGGACTAGTGGATGTGTTAGGAGGACACCTTTGCAGTGTGAAAGAGTCAACAATCAAAACAAAAGTGTGGATACAAAAGCAGATGGGTTTCTGAAACTGCAAATGGTTAAAGTACCAGATTTTGCAGAAAGGTCACCTATTACACCAGACATGTGCAGAAGCCAATGCTTGGAGAATTGCTCTTGCATTGCATATTCTCATGATGAAGGGATAGGATGTATGACTTGGACTAGGAATCTGCTTGACATACAACAATTCTCGAGTAGAGGACTTGATCTATATGTTCGTGTAGCCTATACCGAACTTGACAAAGGAACAAACATAAAACTCATCATTACAATTACAGTGATAATAGGAGCTGTCATAATTGGCATTTGTGCATATATCATGTGGAGAAGGACTTCTAAGCTGGCAGCTAAATTGTGGCAATCTATTAAATCAGCAAGGAGAAAGAACAACAAAGCTTTCCTACTTTTTAATAAAGTTGGAACACCAGAAGATTATACAAGCGTAATTGGAGAACTGTCACAAGTTAAACTCCAGGAGCTATTACTATTTGATTTTGAAAAGCTTGCAACTGCCACAAATAACTTCCACTCGTCCAACAAACTTGGGCAAGGTGGTTTTGGTCCAGTATACAAGGGGAAACTGCAAGATGGTCAGGAAATAGCAGTGAAAAGACTTTCTAGAGCATCTGGACAAGGGCTAGAAGAATTCAAGAATGAAGTAGTGGTGATTTGTAAGCTTCAACACTGCAATCTTGTAAGGCTTCTTGGCTGCTGTATTGAAGGTGATGAAAAGATGTTGATATATGAGTACCTGCCTAACAAAAGTTTTGATGCATTTATTTTCGATCCATCAAAAAGTAAACTCCTAGATTGGAGGATGCGTTGTAGCATAATAGAAGGAATAGCTCGAGGATTGCTTTATCTTCACAGAGATTCCAGACTAAGAATCATACATAGAGATTTGAAGGCAAGTAATATCTTGTTAGATGAGGACTTGAATCCAAAAATATCAGATTTTGGAATGGCTAGAATCTTTGGACGGAGTGAAATGGCTATGTCCCCTGAATATGCAATGCATGGACTATTTTCAGAGAAATCAGATGTCTTCAGCTTTGGTGTTTTGATACTAGAGATTGTTAGTGGAAGAAGAAACTTAAGCTTTTATGATAATGAGCATGCTCTGAGCCTTTTAGGATTTGCTTGGATACTGTGGAGGGAAGACAATATTTTGCCTTTAATGGATGCAGGAATATATGATCCTAGTAATCATAAGCATATTTTAAGGTGCATACACATAGGACTTTTGTGTGTTCAGGAACATGCTGCAGACAGGCCCACTATGGCTACAGTAATTTATATGCTTAACAGTGAGGTTGCATTCCTTCCTCCTCCAAGTCAACCAGCATTCATCCTGAGGCAAAATATGTTGACTCCAGTGTCTTCTAAAGAAAGTCATAGAGCTTGTTCAATCAATACAGTGAGCATTACGGAGATTTGTGGCAGATAG 2589 0.3866 MFSILFSNKETKGWPFGANCVDLLNLFISVMGFSRCANLFSVLFMFMLCCYLFDVGISIDTITSSQFIKDPETLSSKDGNFTLGFFSPEDSTNRYVGIWWKSQSTIIWVANRNQPLNDSSGIVTISEDGNLVVLNGQKQVIWSSNVSNITSNTSSHFSDFGNLVLSESTKGNILWQSFQHPSNVMLPGMKLTSNKRTGEKVKLTSWKNLSNPSVGSFSLGIAEHLNIPEFFIWNETRPYWRSGPWNGVFFTGIQEMTTSSGFHFGDDGRGNIDVYYTISNEVTFVIYNLNSQGISQAKWWYDDKKEMLVIWTSHETGCEVYGICGAFASCNLNRSRSPICSCLKGFEPKNKEEWSRQNWTSGCVRRTPLQCERVNNQNKSVDTKADGFLKLQMVKVPDFAERSPITPDMCRSQCLENCSCIAYSHDEGIGCMTWTRNLLDIQQFSSRGLDLYVRVAYTELDKGTNIKLIITITVIIGAVIIGICAYIMWRRTSKLAAKLWQSIKSARRKNNKAFLLFNKVGTPEDYTSVIGELSQVKLQELLLFDFEKLATATNNFHSSNKLGQGGFGPVYKGKLQDGQEIAVKRLSRASGQGLEEFKNEVVVICKLQHCNLVRLLGCCIEGDEKMLIYEYLPNKSFDAFIFDPSKSKLLDWRMRCSIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDEDLNPKISDFGMARIFGRSEMAMSPEYAMHGLFSEKSDVFSFGVLILEIVSGRRNLSFYDNEHALSLLGFAWILWREDNILPLMDAGIYDPSNHKHILRCIHIGLLCVQEHAADRPTMATVIYMLNSEVAFLPPPSQPAFILRQNMLTPVSSKESHRACSINTVSITEICGR. 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02161 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 677 689 IPR008271 GO:0004672|GO:0006468
Seca1g02161 862 Gene3D Transferase(Phosphotransferase) domain 1 632 820 - -
Seca1g02161 862 Gene3D Phosphorylase Kinase; domain 1 525 631 - -
Seca1g02161 862 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 44 806 - -
Seca1g02161 862 CDD PAN_AP_plant 367 456 - -
Seca1g02161 862 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 632 823 - -
Seca1g02161 862 Pfam S-locus glycoprotein domain 240 350 IPR000858 GO:0048544
Seca1g02161 862 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 525 631 - -
Seca1g02161 862 Pfam PAN-like domain 383 441 IPR003609 -
Seca1g02161 862 CDD B_lectin 65 181 IPR001480 -
Seca1g02161 862 ProSiteProfiles Bulb-type lectin domain profile. 59 178 IPR001480 -
Seca1g02161 862 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 55 178 - -
Seca1g02161 862 Pfam D-mannose binding lectin 105 207 IPR001480 -
Seca1g02161 862 ProSiteProfiles PAN/Apple domain profile. 371 456 IPR003609 -
Seca1g02161 862 SUPERFAMILY Protein kinase-like (PK-like) 541 848 IPR011009 -
Seca1g02161 862 SUPERFAMILY alpha-D-mannose-specific plant lectins 97 211 IPR036426 -
Seca1g02161 862 Pfam Protein tyrosine and serine/threonine kinase 558 812 IPR001245 GO:0004672|GO:0006468
Seca1g02161 862 Gene3D - 55 179 IPR036426 -
Seca1g02161 862 SMART serkin_6 556 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02161 862 ProSiteProfiles Protein kinase domain profile. 556 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02161 862 PIRSF SRK 32 862 IPR024171 GO:0004674
Seca1g02161 862 SMART blect_4 65 181 IPR001480 -
Seca1g02161 862 SMART ntp_6 383 455 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02161 Seca-Chr1 49890252 49893475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02161 542 862 Receptor kinase-like Gene Family AT4G23140 53.488 3.26e-115 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca1g02161 PK_Tyr_Ser-Thr 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02161 - - tpra:123892366 1241.87