Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02094 ATGCAAGAGAAAGATAATAGGAGTAATGAGGGTGATGGTGAAAATAACTTGAAATCCAGTAATGAAGTCACTGTTTGCTCTGATGAGGATGTTCCTGATGTTGATAAAAGGATTTCTGAGTTAAGTGATGATGATATTAGATTGCTTGAGTTTGATTTTCTTCAGGATGCATATGATTTCTATAGGGAAAGGAGTGAGAAGCATTTAAATAGGACAAATAGAATTAGTGAAGCTAAGGCCATTACTCGTACTAACTGTCTTGCGAGGATTCGATTGTATCTGGACAAAGATAGTAGCAAGTGGAGGGTTGGAATGTTTGAGCCAGATCACAACCATGAGCTAACTCCTTCTACTATGGTACATTTGTTACCCAAATATCGTGGTTTGAGTGTTGCTGATAAGGAACAAGTAAACAGTCTTCACTTATACGGTGTAAGGACTTGTCATATAATGAGGCTAATAATGGGTCAGAAGGGTGGTCATTCAGACCTTGGATTTTGTAATAAGGACTTGTACAATCACATTGACAAGGAGAATAGGGCCAAAATTGAGGATGGGGATGCTTTTACTGCATTGTGCTATCTTCAAGCAAAGCCTTTAGTAATTTTTTGTGGTTATAACCATCATGGTGAAACCACTATCTTTGGTTGTGCTCTTGTTGCGGATGAGAAGACAGAAACATATAAATGGGTACTTGAAACTTTTCTGGAAGCCATGTTCAATAAAGTACCGAAGGCAGTTGTTACTGATGGGGATGGTGCCATACATGAAGCTGTTAGGACTGTTTTTCCAGGTTCTCTTCATAGGCTATGTTCATGGCACCATCACCAAAATGCTTGTGAGAACGTAAAAAATCCGAAATTTCTTGAAGATTTTAAGATGTTGTTATATGCCAATTTTACTCCTGAGAGGTTTGAGGAAGAATGGTTGAAGGTTATTGAGAAACATGGTTTGAACAATAATAAATGGGTTAGGAAAGTGTATGACTTGAGGAGGATGTGGGCCACTATTTGTGAAGGTATTAATTCATTCATTAAGAGATATGTTCAGAGTAAAAACAATCTTGTTGATTTTCTTCACAATTTTGAGAGAGCACTGAATGAATATAGGCATAATGAGTTAAATTCTGATTACAAGTCTACATACACCCAACTTGTTTTGACAACTACTTTGGAAAAGTATGAAGTACATGCTTGTAATGTGTATACCAGGAATAAATTTTTTGATGTAAGAAAGGAGATTGAGAAAGTTGCTGCCTTGAATGTGGTTGATAGGTCAGAGGTAGGTAATATTGTTAGAATGAAGATGAATAAGTTTGGAAGTCCTAATTCCTTATATGTTGTGATTTATGATAAGGCTGTTGAATCAATCCCCCCGTCGTTGATTTGCAAAAGGTGGACAAAGTTTGCTAAAGTTAATCAGATTTCTGCTATTTATAATGAAGATGGTGACACATCAAAAAAAGAAGTGTTGAGGTCTGGTGTTGTTGGTGCAGCCTGTAACAGGCTTAACAAGGCTACACATAAAAATCCTCATAATTTTGTGAAAAACATTGAGGCTATACATCATTTGGAAGATCAAATGGAAAGGCAAGATGGTGCTGATCTGAAAATTGGTGACATATCAAGGGTTGTTCGCGATCCAACAATTGTCAAAACTAAAGGTGCACCTCGTAAAAGTAAGAAAATGATGAAGAAAAGGAAATGCTCTTATTGTAAGCGTCCAGGTCACACAGTTAGGACATGCTCCAAGTTCTCAACTCGAGACCAGTTGCAAACCGTTGAAGAAGAGGAATCTTCTGTTGAGAGTGATGGAGACTCACTTGGTGTAACTGGAACTTATAATAATGAATCTTTAAACCATAGCAAAGGTGTAACTCATTCTGTTCAGAAATGTAATAAGAAGGCTAAACATGATGGTGTTGTGAAATTAACTCGGGAGTCAGTAAATGACAGAGACACTGTGGCGATAGCTGGTAATGAGGATTTCACACAGATGCACAATGATCAAAGGTTCTCTGGAATGTATCAATATCGACCATCTATGATACAACATTTCGCTCAAGTTCAGTTTAATAGCAGAGTACATGTGGTGCCCCAGTACCCTCATATACCCATTCAACATCCATTTCATAACTCCACAGGTTATCATGGAATGAATACATTTGCAAGTCATTCACAGAATTTTACAACTGTACTGAACGAGGTCGAGAGCAAAGCTGGTCTGAGCATGAAGTGTTTCAATCCAAGAGATAGTTGA 2259 0.3754 MQEKDNRSNEGDGENNLKSSNEVTVCSDEDVPDVDKRISELSDDDIRLLEFDFLQDAYDFYRERSEKHLNRTNRISEAKAITRTNCLARIRLYLDKDSSKWRVGMFEPDHNHELTPSTMVHLLPKYRGLSVADKEQVNSLHLYGVRTCHIMRLIMGQKGGHSDLGFCNKDLYNHIDKENRAKIEDGDAFTALCYLQAKPLVIFCGYNHHGETTIFGCALVADEKTETYKWVLETFLEAMFNKVPKAVVTDGDGAIHEAVRTVFPGSLHRLCSWHHHQNACENVKNPKFLEDFKMLLYANFTPERFEEEWLKVIEKHGLNNNKWVRKVYDLRRMWATICEGINSFIKRYVQSKNNLVDFLHNFERALNEYRHNELNSDYKSTYTQLVLTTTLEKYEVHACNVYTRNKFFDVRKEIEKVAALNVVDRSEVGNIVRMKMNKFGSPNSLYVVIYDKAVESIPPSLICKRWTKFAKVNQISAIYNEDGDTSKKEVLRSGVVGAACNRLNKATHKNPHNFVKNIEAIHHLEDQMERQDGADLKIGDISRVVRDPTIVKTKGAPRKSKKMMKKRKCSYCKRPGHTVRTCSKFSTRDQLQTVEEEESSVESDGDSLGVTGTYNNESLNHSKGVTHSVQKCNKKAKHDGVVKLTRESVNDRDTVAIAGNEDFTQMHNDQRFSGMYQYRPSMIQHFAQVQFNSRVHVVPQYPHIPIQHPFHNSTGYHGMNTFASHSQNFTTVLNEVESKAGLSMKCFNPRDS. 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02094 752 SUPERFAMILY Retrovirus zinc finger-like domains 555 586 IPR036875 GO:0003676|GO:0008270
Seca1g02094 752 Gene3D - 549 594 - -
Seca1g02094 752 MobiDBLite consensus disorder prediction 1 28 - -
Seca1g02094 752 Pfam FAR1 DNA-binding domain 62 115 IPR004330 -
Seca1g02094 752 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 49 497 IPR031052 GO:0006355
Seca1g02094 752 Pfam MULE transposase domain 199 278 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02094 Seca-Chr1 45084703 45087733 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g02094 MULE 3.4e-19 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02094 - - tpra:123910662 516.924