Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02092 ATGGAGAACAACACCGTATTCAATGATCGGAACTTTGTGGACAATGAACATGAAGAAGTTCCTGATTTCTTTTGTTGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTTCTATCTTGTGGTCACATATGTTGTTTCTGGTGTGTCTATAAATCAATGAATTGTCTGCGTGAGTCTCAATGTCCAATATGTAGGCATCAATACTATCACTTTCCAACAGTCTGCCAACTGCTTCACTTTTTGCTTCTTAAGATCTATCCCGTTGCTTACAAGAGAAGGATAAATCAAACTCTTGAGGAAGAAAAGAAATCGGGCTTCTACTCCCCTCAACTTGATCCTGATACATGTGAATCACAAGCTAAATTTGGTCATTCTTGTAGCCCTTCTTCCTCCCCTATCAAAGGGCTGCTGTCTAACTCATGCAATGTGGGAACATCTGAATGTATGGAGCAATCAGGGTGCAGTGCTCATGAAGGAGATGAAAACATCATCTATTTTGAACACACTTCTGATGGAGAACATGAAGTTATTGGGACTCCTGTTGAAGGAAAAAATATGCCTCAGGAGGAGCTTTATCTACAACCGAAAATATCAGCTGCAGAAGATATCCCGTACTTCTATAGTGAGGAAGAAAAGAAATCGGGCTTCTACTCCCCTCAACGTGATCCTGATAATTGTGAATCACAAGTTAAATTTGATCATTCTGGTATCCCTTCTTCACCTATTAAAAAGATATCTGAATGTATGGAGCAATCATGGTCCAGTGCTCATGAAGGAGATGAAAGCATCATCTATTGTGAACACTCTTCTGATGGAGAACCTGAAGTTATTGAGACTCCTGTTGAAGGAAAAAAAAAGCCTCAGGAGGAGCCTTATCTAGAACAGAAAATGTCAGCTGCAGATGTGTTGTGTACAATGTGCAAGCAACTGCTCTTTCATCCTGTAGTTCTTAATTGTGGTCATGGTACTCAATACTCTTAA 984 0.3994 MENNTVFNDRNFVDNEHEEVPDFFCCCVCLDLLYKPIVLSCGHICCFWCVYKSMNCLRESQCPICRHQYYHFPTVCQLLHFLLLKIYPVAYKRRINQTLEEEKKSGFYSPQLDPDTCESQAKFGHSCSPSSSPIKGLLSNSCNVGTSECMEQSGCSAHEGDENIIYFEHTSDGEHEVIGTPVEGKNMPQEELYLQPKISAAEDIPYFYSEEEKKSGFYSPQRDPDNCESQVKFDHSGIPSSPIKKISECMEQSWSSAHEGDESIIYCEHSSDGEPEVIETPVEGKKKPQEEPYLEQKMSAADVLCTMCKQLLFHPVVLNCGHGTQYS. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02092 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 113 IPR013083 -
Seca1g02092 327 SUPERFAMILY RING/U-box 13 72 - -
Seca1g02092 327 FunFam E3 ubiquitin-protein ligase PRT1 17 112 - -
Seca1g02092 327 SMART ring_2 26 65 IPR001841 -
Seca1g02092 327 PANTHER UNCHARACTERIZED 17 322 - -
Seca1g02092 327 ProSiteProfiles Zinc finger RING-type profile. 26 66 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02092 Seca-Chr1 45010201 45015876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02092 23 68 C3H Transcription Factor Family AT2G42030 39.130 5.40e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02092 - - gmx:100787174 321.242