Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02091 ATGAAGCCCACTTTGGCTCAGGCTCAGAGTACTTGGGAAGCTGATAAAATGCTTGATGTTTACATTCATGATTATTTTATGAAAAGAAAATTACATACTGCTGCAAAAGCTTTTATGACAGAAGGAAAAGTTTCCACCGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTTTTTGAGTGGTGGTCTGTCTTTTGGGACATATTCATCTCAAGGACAAATGAGAAGCATTCTGAGGCTGCTTCAGCTTACATTGAGACCCAGCAAGTGAAGGCCAGAGAACAACTTCAAATGCAGCAATTGCAACTAATGCAGCAGCGGAATGCACAGTTACAGCGCAGAGATCCTAATCATCCCGCACTTGGTGGTTCTTTAAATGCCATGAACTCTGAAGGAATGTTGGGGCAGCCACCAGCAAGTGTGTTGGCGATGAAAATGTATGATGAACGAATAAAACACCCTCATTCAATGGATTCAGAGGCATCTCCAACTCTTATTGATGCAAATAGGATGGCCCTTCTCAAATCAGCAACAAGTCATCAAGGTCAGTTGGTTCACGGTAATTCAGGGAATATGTCCAATGCATTGCAGCAAATTCAGGCCAGGACTCCTTTGGCCACTGACATAAAAGGAGAAGTTAACTTAGGTGCCACTCCAAAGAGTTTGCCTATGGATACATCAGTCTATCGACAAGCAATTTTACAATCAAAATCTGGGCTAGGCAGTGCAGGATTAAATCAAGGAGTTACTAGTCTTCCATTAAAGGGCTGGCCTCTAACTGGAATTGATCAACTGAGACCTAATTTGGGTGTACAAGTTCAGAAGCCTAATTTGACAACCCAAAACCAATTTCTTTTGGCATCACAACAACAACAGGTCTTGGCACAGGCTCAGGCACAGGCACAGAACAACCTTGGGAATTCTAATTATGGTGATATGGATCCACGAAGACTTTCTGGTCTTCCTCGAGGTAGCTTAAATGCAAAGGATGGTCAGTCTACCAGGAATGATGGATCTATTTGCTCCCAAATGCAGTCAGGTTCACCTAAGATGAAGATGGCTCAGTCGCAACATTCACTATCTCAACAGCAGGAGCAATTGCAGCAGAATAACAGAAAAAGAAAACAGCATTCTTCTTCTGGAGCTGCTAATAGCACTGGTACTGGAAACACAGCTGGTCCTTCACCTAATTCACCACCATCAACACACACACCTGGTGATGGATTAAATACAGCAAGTAGCATGCAGCATGTTAACAGTGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGTCTTGCTTCATCTTCAAATTTGCTGGATGACATGGAACGATTTGGAGATGTTGGTGCTTTAGAAGATAATGTGGAATCCTTCCTATCAAATGATGGAGGAGATGGTGGCAATCTCTATGGAACAATAAAACAAAGTCCGGCTGAGCAACAAAAAGAGTCTTCAAAAGGTTTTACCTTTGCTGAATTTGGTTGCATAAGAACAAGGAACAGCACAGTCACTTGCTGTCACTTTTCTTCAGATGGAAAATTGCTTGCCAGTGCTGGGGATGACATGAAGGTTGTCCTCTGGAACATGGACACTTTAAAGACAGAGAGCACTCCTGAAGAACACAAATCAGTTATTTCAGATGTCCGTTTTAGACCAAATTCGACTCAGTTGGCGACAGCCTCATTTGATAAATCTGTGCGGTTATGGGATGCAGCCAATGTAACAGACTTCTCTCAGTTTGCCTTGCCTATAAATTATTGA 1773 0.4264 MKPTLAQAQSTWEADKMLDVYIHDYFMKRKLHTAAKAFMTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEAASAYIETQQVKAREQLQMQQLQLMQQRNAQLQRRDPNHPALGGSLNAMNSEGMLGQPPASVLAMKMYDERIKHPHSMDSEASPTLIDANRMALLKSATSHQGQLVHGNSGNMSNALQQIQARTPLATDIKGEVNLGATPKSLPMDTSVYRQAILQSKSGLGSAGLNQGVTSLPLKGWPLTGIDQLRPNLGVQVQKPNLTTQNQFLLASQQQQVLAQAQAQAQNNLGNSNYGDMDPRRLSGLPRGSLNAKDGQSTRNDGSICSQMQSGSPKMKMAQSQHSLSQQQEQLQQNNRKRKQHSSSGAANSTGTGNTAGPSPNSPPSTHTPGDGLNTASSMQHVNSVQKSMMMYGTEATGGLASSSNLLDDMERFGDVGALEDNVESFLSNDGGDGGNLYGTIKQSPAEQQKESSKGFTFAEFGCIRTRNSTVTCCHFSSDGKLLASAGDDMKVVLWNMDTLKTESTPEEHKSVISDVRFRPNSTQLATASFDKSVRLWDAANVTDFSQFALPINY. 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02091 590 Pfam LisH 16 42 IPR006594 GO:0005515
Seca1g02091 590 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Seca1g02091 590 ProSiteProfiles Trp-Asp (WD) repeats profile. 500 541 IPR001680 GO:0005515
Seca1g02091 590 MobiDBLite consensus disorder prediction 326 413 - -
Seca1g02091 590 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 574 IPR001680 GO:0005515
Seca1g02091 590 Gene3D - 474 584 IPR015943 GO:0005515
Seca1g02091 590 Coils Coil 353 373 - -
Seca1g02091 590 SMART WD40_4 493 532 IPR001680 GO:0005515
Seca1g02091 590 SMART WD40_4 535 574 IPR001680 GO:0005515
Seca1g02091 590 SUPERFAMILY WD40 repeat-like 499 577 IPR036322 GO:0005515
Seca1g02091 590 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 500 535 - -
Seca1g02091 590 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 12 580 IPR044716 GO:0003714
Seca1g02091 590 MobiDBLite consensus disorder prediction 304 413 - -
Seca1g02091 590 Coils Coil 94 114 - -
Seca1g02091 590 Pfam WD domain, G-beta repeat 541 574 IPR001680 GO:0005515
Seca1g02091 590 Pfam WD domain, G-beta repeat 505 532 IPR001680 GO:0005515
Seca1g02091 590 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 574 - -
Seca1g02091 590 ProSitePatterns Trp-Asp (WD) repeats signature. 519 533 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02091 Seca-Chr1 44863409 44872654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02091 498 574 Miscellaneous Gene Families AT5G08390 33.750 2.91e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Seca1g02091 WD40 6.7e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02091 - - gmx:100799686 901.738