Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02085 ATGGCAAACCGTGACCAACCAGTGAATGGAAAAAGCTCCAAGCTTTCCCTCTTACACAATGGTAACATTGTCTTGGTTGATGCTGCACTCAACAATGCATGGTCTTCAAACACTTTATCACCAGCCCCAGCAGAGTTGCATCTCAAAGATGATGGCAATCTTGTGTTACGTGAGTTGCAAGGAACCATTTTGTGGCGAAGTTTTGATTTTCCAACAGATACTCTCCTTCCTGGCCAACCTCTTACTAGATATACAAAGCTTGTGTCTTCAAGAAGTGAGAGTAACCATTCCTCTGGTTTCTATAAGTTGTTTTTTGATGATGACAATGTTCTTGGTCTTCATTATGATGGTCCTGATGTTTCAAGCACTTATTGGCCTAAACCTTGGCTATTGAGTTGGGATGTTGGTAGGTCTAATTACAATAGTAGCAAGATTGCAGTGTTAAATTCTGTTGGTCTTTTCAATTCTTCAGATAATTTCACTTTTGTAACATCTGATTATGGCACTGTGCTACAAAGAAGATTGAAATTGGATTCTGATGGTAATGTCAGAGTGTATAGTAGAAATAATGTGTCAGAGAAATGGTATGTTTCATGGCAAGCCATTTCTAATGCTTGCATTGTTCATGGGATTTGTGGAGCCTATAGTACATGTAGTTATGATATTAAAAATGGAAGAAAATGCTCTTGTGTTCCAGGATACAGATTAAAGAACCATAGTGATTGGTCTTATGGGTGTGAACCCATGTTTGATCTTACATGCAATAGAAATGAGTCTACTTTCTTGGAGATGCGTGGTGTTGAGTTTTATGGCTATGACAATCATTATGTTGAAGTTAGTAACTATAGTGCTTGTGAGAGTTTATGTTTACAAGACTGCAATTGCAAAGGTTTTCAGCACTCATATAGCCCAGAAAAAAACTTTTTCAGGTGCTACACAAAAACACAATTGCTCAATGGAAGGCGTTCATCATCCTTCCCAGGAACAACCTACTTGAGATTACCTAAAAATAATAGCTTCTCTGATGAAGAATCTGCTACACCATATGACCATGTTTGCTCAGTACAACTTCAAAGAGTTTATATTAGAAAAGGTGCAAACAGTTTTGTGAAGTTTTTTCTGTGGTTTGCTACTGCAATTGGAGCTTGTGAAATGGTTTGCATTTTTGTAGTTTGGTGTTTCCTTATTAGGACCCACCAAAAGGTTGATGCAGAACAACAGGGTTACCATGTTAAGGCAATGGGGTTCAGAAAATTTAGTTACTCTGAGCTAAAGAAAGCAACAAAGGGGTTTAATCAAGAGATTGGAAGAGGTGGAGGAGGGGTTGTATACAAAGGCCTATTGTCTGATCAAAGACATGTAGCAATTAAAAGACTATATAATGCTAAACAAGGAGAAGGGGAATTTCTTGCTGAAGTAGGCATAATTGGAAGGCTTAATCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAGCACAGGCTTTTGGTGTATGAGTACATGGAAAATGGTTCTTTAGCTGAAAATCTCTCATCTAACAAACTTGATTGGAGCAAGAGGTATAAAATAGCTCTTGGAACAGCAAGAGTTCTAGCATATCTACATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCACAAAACATACTTTTGGATTCTAACTACCAGCCCAAGTTAGCAGATTTTGGCTTGTCTAAGCTAATAAACAGAAATAGCCTCAACAATTCAAGCATCTCTATGATCAGAGGGACTAGAGGATACATGGCACCTGAGTGGGTTTTTAACTTGCCTATTACATCCAAGGTGGATGTTTATAGCTATGGAATTGTTGTCTTGGAGATGATAACAGGAAAGAGCCCAACTACATGTATCCAAACTGTTGATGGAGAAGAGGCATATGATGGGAGGCTGGTTTCATGGGTGAGAGAGAAAAGGAGCAGCATATCTTGGGTTGAGCAAATTATTGATCCTGCAATTGGACCAAATTATGATAAAAGTAAGATGGAAATTTTGGCTAGAGTGGCTTTGGACTGTGTAGTGGAAGACAAAGATTCAAGACCTGACATGAGCCAAGTAGTTGAGATGCTTCAATGCCATGGAAGTGATCCTTAG 2130 0.3864 MANRDQPVNGKSSKLSLLHNGNIVLVDAALNNAWSSNTLSPAPAELHLKDDGNLVLRELQGTILWRSFDFPTDTLLPGQPLTRYTKLVSSRSESNHSSGFYKLFFDDDNVLGLHYDGPDVSSTYWPKPWLLSWDVGRSNYNSSKIAVLNSVGLFNSSDNFTFVTSDYGTVLQRRLKLDSDGNVRVYSRNNVSEKWYVSWQAISNACIVHGICGAYSTCSYDIKNGRKCSCVPGYRLKNHSDWSYGCEPMFDLTCNRNESTFLEMRGVEFYGYDNHYVEVSNYSACESLCLQDCNCKGFQHSYSPEKNFFRCYTKTQLLNGRRSSSFPGTTYLRLPKNNSFSDEESATPYDHVCSVQLQRVYIRKGANSFVKFFLWFATAIGACEMVCIFVVWCFLIRTHQKVDAEQQGYHVKAMGFRKFSYSELKKATKGFNQEIGRGGGGVVYKGLLSDQRHVAIKRLYNAKQGEGEFLAEVGIIGRLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAENLSSNKLDWSKRYKIALGTARVLAYLHEECLEWILHCDIKPQNILLDSNYQPKLADFGLSKLINRNSLNNSSISMIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMITGKSPTTCIQTVDGEEAYDGRLVSWVREKRSSISWVEQIIDPAIGPNYDKSKMEILARVALDCVVEDKDSRPDMSQVVEMLQCHGSDP. 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02085 709 Gene3D Phosphorylase Kinase; domain 1 395 503 - -
Seca1g02085 709 CDD STKc_IRAK 435 703 - -
Seca1g02085 709 ProSiteProfiles Protein kinase domain profile. 429 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02085 709 FunFam Serine/threonine-protein kinase 72 199 - -
Seca1g02085 709 PANTHER OS07G0415500 PROTEIN 1 705 - -
Seca1g02085 709 SMART serkin_6 429 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02085 709 ProSiteProfiles EGF-like domain profile. 202 240 IPR000742 -
Seca1g02085 709 ProSiteProfiles Bulb-type lectin domain profile. 1 69 IPR001480 -
Seca1g02085 709 FunFam Putative receptor-like protein kinase 504 708 - -
Seca1g02085 709 Gene3D Transferase(Phosphotransferase) domain 1 504 708 - -
Seca1g02085 709 PIRSF SRK 1 708 IPR024171 GO:0004674
Seca1g02085 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672|GO:0006468
Seca1g02085 709 ProSiteProfiles PAN/Apple domain profile. 254 338 IPR003609 -
Seca1g02085 709 Pfam D-mannose binding lectin 2 84 IPR001480 -
Seca1g02085 709 SUPERFAMILY Protein kinase-like (PK-like) 411 703 IPR011009 -
Seca1g02085 709 Pfam PAN-like domain 254 316 IPR003609 -
Seca1g02085 709 ProSitePatterns Protein kinases ATP-binding region signature. 435 457 IPR017441 GO:0005524
Seca1g02085 709 Pfam Protein kinase domain 432 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02085 709 Gene3D - 70 199 IPR036426 -
Seca1g02085 709 Gene3D Hepatocyte Growth Factor 261 336 - -
Seca1g02085 709 Pfam S-locus glycoprotein domain 155 237 IPR000858 GO:0048544
Seca1g02085 709 CDD PAN_AP_plant 250 335 - -
Seca1g02085 709 Gene3D - 3 67 IPR036426 -
Seca1g02085 709 SUPERFAMILY alpha-D-mannose-specific plant lectins 2 88 IPR036426 -
Seca1g02085 709 FunFam S-receptor-like serine/threonine-protein kinase 398 503 - -
Seca1g02085 709 CDD EGF 206 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02085 Seca-Chr1 44747378 44749507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02085 419 702 Trihelix Transcription Factor Family AT5G38560 42.321 3.14e-66 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca1g02085 Pkinase 2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02085 - - gmx:100783758 1165.6