Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02084 ATGATAAGAGAGACTAGAGGATACATGGCACCTGAGTGGGTTTTTAACTTGCCTATTACATCCAAGGTGGATGTTCATAGTTATGGAATTGTTGTCTTGGAGATGAAAACAGGAAAGAGCCCAACTACAGGTATCCAAACTGTTGATAGAGAAGACGCATATGATGGGAGGCTGGTTTCATGGATTTTTGAGAAATATGTTAAGAACTGGATTGCAGTAGCTGTGCAGTTCCAGGGTTTGGTCCAGTCAACTTGTTTTGGAGCACTTGCTATGACAAAGCAAATGACACTGGTTTTAGCTAACATAATAATACAGTGA 318 0.4025 MIRETRGYMAPEWVFNLPITSKVDVHSYGIVVLEMKTGKSPTTGIQTVDREDAYDGRLVSWIFEKYVKNWIAVAVQFQGLVQSTCFGALAMTKQMTLVLANIIIQ. 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02084 105 PANTHER OS07G0415500 PROTEIN 2 69 - -
Seca1g02084 105 Gene3D Transferase(Phosphotransferase) domain 1 1 98 - -
Seca1g02084 105 ProSiteProfiles Protein kinase domain profile. 1 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02084 105 SUPERFAMILY Protein kinase-like (PK-like) 4 73 IPR011009 -
Seca1g02084 105 Pfam Protein kinase domain 4 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02084 Seca-Chr1 44592406 44595141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02084 2 39 Receptor kinase-like Gene Family AT5G20050 60.526 7.32e-10 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca1g02084 Pkinase 1.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02084 - - gmx:100783758 109.383