Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02076 ATGAGCTGCTTTTCATGTTTCTCATCCCATGAAAAAAAAGTAGCAAAGAAGCCTAACAAAGGAAAGAGGATACAACAGCATGCTACTCAATCTCCTAAAGAAGCAGCCCAACCTCAGCCAGTGTTTTGTACAGAGAAGGTAAGGGCCAGCCCACAAACAGAACCTAAAATAAATAAGGAGGCAAACAAAGAGACTGGGAACAGTAACATTGCAGCCCAAACATTCACCTTCAGGGAATTGGCTGCTACCACAAAGAACTTTAGGAAGGAAAATCTTATAGGTGAAGGTGGATTTGGGAGAGTTTATAAAGGAAGACTTGAAAAAACAAACCAGGAAGTAGCTGTGAAGCAACTAGACAGGAATGGATTGCAAGGGAACAGAGAGTTTCTTGTTGAAGTGTTAATGTTGAGCCTTTTGCACCATCAAAATCTAGTGAATCTAATTGGATATTGTGCTGATGGAGATCAGAGATTGTTGGTATATGAGTACATGCCATTGGGATCTCTTGAGGACCATCTACTTGATCTTCCTCCACAAAAAAATCCTCTGGATTGGTTCACCAGAATGAAAATAGCTTTGGATGCTGCAAAAGGTCTAGAATATTTGCATGACAAGGCCAACCCTCCAGTCATCTACCGTGACTTAAAATCCTCCAACATCTTGCTGGACAAAGATTTCAATGCAAAACTCTCTGATTTTGGACTAGCCAAGTTGGGACCTACTGGGGACAAGTCTCATGTCTCTTCAAGAGTAATGGGTACTTATGGATACTGTGCCCCTGAGTATCAAAGAACTGGTCAGCTCACAGTAAAATCAGATGTATACAGCTTTGGTGTTGTTTTGCTTGAATTGATCACTGGAAGAAGAGCCATTGACAACACAAGACCAGCAAAGGAACAAAATCTAGTTTCTTGGGCATATCCAGTATTTAGGGAACCTCATAGATACCCACAATTAGCAGATCCCCTTCTTCAAGGAAACTTCCCAATGAGATCACTACATCAGGCAGTGGCAGTAGCAGCCATGTGTCTGAATGAAGAACCATCAGTGAGGCCATTGATTAGTGATGTTGTGACTGCTCTTAGTTTCCTTGGGACAAATCCAGGGTCACAAGACCCTATAGGAATTGCACCAGTTGACATGCCCTCCCCAACAACCCCAGAGCAAGAAGAAGAAGAAGAAACTAGTGCCACTTTGAATCTTCTTGACGATGATAGTGCCATGGAACGCCAAAGAGCAGTTGCTGAAGCAATTGAATGGGGTTCAAATACTAGGAACAAAGCACAACGGCGTGATAGTGCTTCCTCATTGTAA 1314 0.4247 MSCFSCFSSHEKKVAKKPNKGKRIQQHATQSPKEAAQPQPVFCTEKVRASPQTEPKINKEANKETGNSNIAAQTFTFRELAATTKNFRKENLIGEGGFGRVYKGRLEKTNQEVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLPPQKNPLDWFTRMKIALDAAKGLEYLHDKANPPVIYRDLKSSNILLDKDFNAKLSDFGLAKLGPTGDKSHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELITGRRAIDNTRPAKEQNLVSWAYPVFREPHRYPQLADPLLQGNFPMRSLHQAVAVAAMCLNEEPSVRPLISDVVTALSFLGTNPGSQDPIGIAPVDMPSPTTPEQEEEEETSATLNLLDDDSAMERQRAVAEAIEWGSNTRNKAQRRDSASSL. 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02076 437 Gene3D Phosphorylase Kinase; domain 1 56 163 - -
Seca1g02076 437 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02076 437 Gene3D Transferase(Phosphotransferase) domain 1 164 370 - -
Seca1g02076 437 Pfam Protein kinase domain 88 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02076 437 FunFam Serine/threonine-protein kinase PBS1 60 163 - -
Seca1g02076 437 FunFam Serine/threonine-protein kinase PBS1 164 374 - -
Seca1g02076 437 SUPERFAMILY Protein kinase-like (PK-like) 73 394 IPR011009 -
Seca1g02076 437 MobiDBLite consensus disorder prediction 1 41 - -
Seca1g02076 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Seca1g02076 437 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Seca1g02076 437 MobiDBLite consensus disorder prediction 418 437 - -
Seca1g02076 437 PANTHER OS07G0668900 PROTEIN 3 370 - -
Seca1g02076 437 SMART serkin_6 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02076 437 MobiDBLite consensus disorder prediction 422 437 - -
Seca1g02076 437 CDD STKc_IRAK 93 361 - -
Seca1g02076 437 MobiDBLite consensus disorder prediction 369 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02076 Seca-Chr1 43905043 43909305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02076 1 436 Glycoside Hydrolase AT3G07070 65.604 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca1g02076 Pkinase 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02076 - - gmx:100786405 723.005