Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02060 ATGAGACCCTCACAGCTTGCGTTCGATGCTCTCCTGGGTGCGAGAATTCAGCGACAACGCATTGATCCTGGAAGTCGTGGCAATATGGGAATGTTCCATGCGTTCGCGTCATCTCAAATTCAGAGGGGCGGTGGCTGCCGTACAACAATTGTCAGTTCTTGTGCTTATGCATTGGGGGGAAGATCCCTGTGTTGCTCCAACCTCTATAAATATGAGTGTTCAGTGGAACCTATCCGGTTGTGCATAGGCTTGGGGAGTGAAATGGCTGGTCCTTTTGACATGATTAGTTCTATTCACCCAGGGAAAGACTCATGGAGACTTAGGGCGAGGGTTGTCCGTCTGTGGGAGATGTGTTCTATTGCTGAACCAACAAAGCCATTTTCCATTGACATGTTGTTGGTTGACGTTGAGGGTGGAAAGATCCAAGCCTCAATTCGAAAACCTATGATGAAGAAGTTTAAAAACCTCATTGCTGAGGGTGAGGTGTACACAATGTTGAACTTTGCGGTTATAAAAAATGTTGGAAATTACCGTGCCTCAAGGCATGATTACAAAATCTTATTCAGTGCAAAAACCAAAGTTTTCCCCTCCCAGTCTGATGTTATTCCAGCTGTTGGATTATCTCTAATGAGTTCTGAGCAGATATCAAAGACCAACGGAGAATCCAACTTCCTAATTGATTTTATGGGTATATTAACTACTGTTTCTGCTGAGAAAGAGGTTGAAACCGATGGGAGGAAGACCAGGATGATGGAAATGGAGCTTGCTGATGACAAGGGGAGGATGAGGTGCACAGTGTTTGGGAATTATGTGGACACATTGACAGAGTATGTGGCCTCAGGTGTTTATCCATTACCTGTTTTAGTTGTCCAGCTTTTTAAAGTTAGACTATACAGGGGCAATGTAGTTTTACAGAATGTGAACAACACATCAAGGATCTTGTGGAATCCTGACATTCCTGAGGCTATTGATTTTAGGAATAGATTGTATCCAAGGAAATCTGTCAATGAATTGCAGATGACTGAGGAGGAAGGGATTTTCATAGTTGATGCCACCATTGTTTCGGTAATGAATGAAGAACAATGGTGTTATGGTGCTTGCAAGTGTCACAAGGCAGTTACACCTGACGGAGGTCTTTACTACTGTTCGAATTGCGCAACTCATGTTGTTGAAGTTACTCCAATATATAAGCTAAGGGTCAAAGTTTGTCGTTGGGATGACTCCGCTTCATTTATTCTCTTCGACTCAGACTGTGTTTATTTGATTGGGAAGACTTGCAAGGAACTACTTGCAGAGTCTAGGGGTTTGAAGGCAGATGAGCATCCACCTGATTTCAGGTGCCTCATTGGCAAGGATTTGCTCTTCAAGGTAGAGAAAACAGCTGAATATTCTTTCAGCTACGATGACACTTTTAAAGTTAAAAAGGTGTGTGATGACAAGGAAATTATTCAACAATTTAAGAAATTCTCAACTATTGAGACTCCTCTGAAGTCTAAATTTCAGCTCCCTTTTCCCAAGCTTGATAATTCTCAGAGTCCAAATGAAGGCATGACTGATAGTGTTGAAGCCATTAGTGAATTGTCTCTAAATTCAGTTGGCTTTAATGATGGATCAACCAGCTCCAGTGTCCATATGTCCCTTCCCAGCAGCTCAAGTGTTGAATGCTCCAACCTCGGCCATGATGATGAAGAAGATGATGACATTCCTCTTACTTTCAAACGACGCAAGTTGAAGCCGATTAAGCTAGAGGAAGATTAG 1758 0.4255 MRPSQLAFDALLGARIQRQRIDPGSRGNMGMFHAFASSQIQRGGGCRTTIVSSCAYALGGRSLCCSNLYKYECSVEPIRLCIGLGSEMAGPFDMISSIHPGKDSWRLRARVVRLWEMCSIAEPTKPFSIDMLLVDVEGGKIQASIRKPMMKKFKNLIAEGEVYTMLNFAVIKNVGNYRASRHDYKILFSAKTKVFPSQSDVIPAVGLSLMSSEQISKTNGESNFLIDFMGILTTVSAEKEVETDGRKTRMMEMELADDKGRMRCTVFGNYVDTLTEYVASGVYPLPVLVVQLFKVRLYRGNVVLQNVNNTSRILWNPDIPEAIDFRNRLYPRKSVNELQMTEEEGIFIVDATIVSVMNEEQWCYGACKCHKAVTPDGGLYYCSNCATHVVEVTPIYKLRVKVCRWDDSASFILFDSDCVYLIGKTCKELLAESRGLKADEHPPDFRCLIGKDLLFKVEKTAEYSFSYDDTFKVKKVCDDKEIIQQFKKFSTIETPLKSKFQLPFPKLDNSQSPNEGMTDSVEAISELSLNSVGFNDGSTSSSVHMSLPSSSSVECSNLGHDDEEDDDIPLTFKRRKLKPIKLEED. 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02060 585 MobiDBLite consensus disorder prediction 540 556 - -
Seca1g02060 585 SUPERFAMILY Nucleic acid-binding proteins 211 329 IPR012340 -
Seca1g02060 585 CDD RPA1_DBD_B_like 227 330 - -
Seca1g02060 585 Pfam Replication factor-A C terminal domain 347 441 IPR013955 -
Seca1g02060 585 CDD RPA1_DBD_C 338 476 IPR047192 -
Seca1g02060 585 MobiDBLite consensus disorder prediction 540 570 - -
Seca1g02060 585 PANTHER OS03G0429900 PROTEIN 67 536 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca1g02060 585 SUPERFAMILY Nucleic acid-binding proteins 330 474 IPR012340 -
Seca1g02060 585 Pfam Domain of unknown function DUF223 131 199 IPR003871 -
Seca1g02060 585 CDD RPA1_DBD_A_like 106 194 - -
Seca1g02060 585 SUPERFAMILY Nucleic acid-binding proteins 91 198 IPR012340 -
Seca1g02060 585 Gene3D - 91 196 IPR012340 -
Seca1g02060 585 Gene3D - 329 489 IPR012340 -
Seca1g02060 585 Gene3D - 207 328 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02060 Seca-Chr1 43320051 43323742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02060 95 431 Core DNA Replication Machinery Family AT2G06510 22.739 1.60e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02060 - - lja:Lj6g3v0884310.1 382.104