Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02047 ATGGAGAACTCTGAATTTGTATCTAGCATTAAGTCTGATGATGATAAGTATAATGGAGAGGAAACAAAATATTTTGAGAAGGATGAAAATGAAGATACTTGTGTAGTTCATAAAGAGTCTAGTAGGTTGCTTGACTTAATTGCTGATCAAATTTTGTGCCTTGAATTTGGCAGTGAAGAAGAAGGATATAATTTTTATCAATTATATGCGAAGTATCATGGTTTTGTTGTTAGAAAAGATGACACGACCAAGGATATTAGGGGTAATATTATCATGCGGCAGTTTGTTTGCAATAGGGAGGGAGAAAGGAACAAAAAGCACTTTATGATGGTAGATAGGAAAAGGGAGCATAGGCCACTCACCCGTACAAAATGTCTAGCTAAGCTTCGTATACACTACGATCACAATAGTTTAAAGTGGAAAGTGGTGTCATTTGAGCAATGTCATAACCATGAGCTTACACCTTCTAGATTTGTGCACCTACACCTTGCTTACCGGGGGTTAACAGATGCTGATATGGCTCAGGTAAATAGTTTACATGCATATGGTCTTAGAGGTTGTCACATCATGGGGTTCTTAGTGGCTCAAAAGGGCGGACATTGTCGTGTTGGTTTTATGAAGAAGGACATGTACAACTATCTTGATCGAAAAAATCAAGCAAAGGTTAAGAAAGGGGATGTACGTGCTGGCTTGAGTTACCTTCAAGGTAAGGCTGACAGTGACCCACTTTTATATGGGAAATACTCAACTGGATCTGACGGTAAATTAAAGCGTCTTTTTTGGGCGGATGGAGTTAGTAGGTATGATTTTCATTGTTTTGGGGATGTTCTTGCTTTTGACACCACATACAAGAAGAACAAGTACAATTGTCCAGTTGTAATTTTTTCGGGGTGCAATCATCATTCACAAACGGTTATTTTTGGGTGTGCTTTAGTTTCAGATGAAACAATTGAAACATATAAGTGGGTTTTAGAAGCTTTCCTGGATGCAATGGGTAATAAGAAGCCAAAAACGGTTGTGACAGATAGTGATAGTACAATGAGGGAGGCTATTAAGCATGTTTTCCTAGAATCATGCCATCGCTTGTGTGCATGGCACTTACATAAAAATGCTTGTGAGAATGTGAAAAATTCTCCATTTTTGGATGACTTCAAGAGAGCAATGTACTCGAATTTCACCCCAGATGAATTTGAGGAGTTTTGGAACAAGAAGGTGGTTGAACATGTTTTGATGGGGAACAAATGGGTGACAAAAACTTATGAAAACAAGGCACTGTGTGCAACGACATATCTTTGGGATAATTTCTTTGGACGTATAAGGACTACATCTCAATGTGAATCCATTAATTCTTTTATTAGGTCTTATTGTAAGAATAAAAGTAGCATGGTTGAATTTTTGCACAAGTTTGAGCAGGCAAAGAAGGAGTACAGAAATAATGAAATGATGGCTGAATTTAAGTCTTTATTTTCGGAGCTGGTGCTTACTACATATCTTCGTAGCATTGAGAGAGAGGCTTCTAAAATCTACACCCTGTGA 1536 0.3783 MENSEFVSSIKSDDDKYNGEETKYFEKDENEDTCVVHKESSRLLDLIADQILCLEFGSEEEGYNFYQLYAKYHGFVVRKDDTTKDIRGNIIMRQFVCNREGERNKKHFMMVDRKREHRPLTRTKCLAKLRIHYDHNSLKWKVVSFEQCHNHELTPSRFVHLHLAYRGLTDADMAQVNSLHAYGLRGCHIMGFLVAQKGGHCRVGFMKKDMYNYLDRKNQAKVKKGDVRAGLSYLQGKADSDPLLYGKYSTGSDGKLKRLFWADGVSRYDFHCFGDVLAFDTTYKKNKYNCPVVIFSGCNHHSQTVIFGCALVSDETIETYKWVLEAFLDAMGNKKPKTVVTDSDSTMREAIKHVFLESCHRLCAWHLHKNACENVKNSPFLDDFKRAMYSNFTPDEFEEFWNKKVVEHVLMGNKWVTKTYENKALCATTYLWDNFFGRIRTTSQCESINSFIRSYCKNKSSMVEFLHKFEQAKKEYRNNEMMAEFKSLFSELVLTTYLRSIEREASKIYTL. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02047 511 PANTHER OS01G0519700 PROTEIN 35 510 - -
Seca1g02047 511 Pfam FAR1 DNA-binding domain 64 154 IPR004330 -
Seca1g02047 511 Pfam MULE transposase domain 276 370 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02047 Seca-Chr1 42701022 42702557 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g02047 MULE 8.5e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02047 - - ccaj:109792835 692.189