Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02023 ATGGCACTAAATAAGACAGGAATAGGTACCAAAACTGGGAAGGATCCTGGCTTGTTTCCTCAATACAACCAACCAGAATTACCCAGTGGTGTTTCCAATACAAGACATAATGTACATAATAATATCTCTATGCAGGCAGGGGAAGAATTTTCTGTGAATTTTGGCCATGATGGAATTGCTGCTGCAAGAGTTCCTGCTTTGCCTGATATATGTCGAAATAGTGAGAATAGGTTTGGGTTGAATAGGGAGAATGGTCATGTGAGATATGAAGATCTTACTAATATTTTGGGGTTGAGGAGAATGGATTCTGAGAGTTCTTCTGATATAGCTGACTTTATCTCTATAAAACTGCCAGCACAGGAGATGGAAAATGGGGCTTCTGTAAATATTTTAAGCAAAATTCAGAAGGGAGATGGTGACAGTGGCCATGCATTGAGGAAGGCTGTTCGTGAACCAGTTGGTGACCAAGCTGGTATTGGATCAGCTGTACCAATACCACCCCTTCGCAGAAATGAATCTTCTCTGTCCAATGGATTTTCTGGTTCAGGAATTTTAGATGATTCTCTGTCAGGGAAAATGAAGTTTCTATGCAGCTTTGGTGGCAAAATATTACCAAGGCCCAGTGATGGGAAACTAAGATATGTAGGAGGAGAAACCCATATTATATCTATCCAAAAGGATATTTCATGGGCAGAGCTTATGAAGAAGACCTTAGGTATTTGCAGTCAACCTCACACAATCAAATACCAGCTTCCAGGGGAGGATCTTGATGCTCTAATATCTGTTTCCTCTGACGAGGATCTTCAAAATATGATAGAGGAATACTATGGGCTTGAAAGCCATGAAGGTTCTCAAAAACTTCGAATTTTTTTAGTTCCTTTGGGTGAATCTGAAGAGACATCATCAACTGAGGCAAGCACCGTTCAACAGAATGATCCTGATTACCAATATGTTGTTGCTTTAAATGGTATAGTAGACCTTAGTCCCAGGAAAAACATTGGTGGACAGAGCATGACAAATGAAGCAAGTCAGCCAGGGACAAGTTTGAATGTTGCTCCAGTTTTTCAGAAAACTTATCCAAATGCATCTTCTCCTTTGGAGACCAGGGATGGTATTAATGTTTTAAATCCAGATGGAATTTTGAATGATTCCCTAAATCTGCAAAAGCCCTTGCCAATTTCTCCTACTCCAGTTCAAGTTGCAGGTTCTAGCACAGGTTATATACAATTGCTTAGTAACAACTCGTGCCAGGGAAGTATTGAGAGCAACAAATCATTTGTCACTACTCAGCTACACCCAGAGAACTCCAGCATAAGCACTGCTGATTGCAGATACCCTAATAATGTAGCTGTTACTTTGTCAAGCGACAGTCACCCTTATCGACATGGTGATGTTAGTCAGCCTCAGAAGCTCAATAGACAGTATTTTGACAACTACAATCCGGACAAGGAATTAATTACTCCTGTATATGTTAACTCAAGTGATGGTTACAGTGATGAAGTTTTTGGTGGAAGGTCCTTGCATAAGGATAGAAGTTTCTACGCTGGAAATCCTCTTTCGTGCTTGGATGATCCAATCCGTCAACAGGCTGAATCTTATGGAATTACTGACTCCTCTCATGCGATGCCTCATGCTTTTTCTGATTCACAGTTGCAAGAGAGTGGAGCAAGGTCTGGTTACAGCTCACAAGAAGGAATTGGCCAATCTTTCTCCTTGAACCTTGAAAAGGCTCAGTTATCTTCAATGTTAAACTTTGGTGTCTCACAAGTGAACCTTTTGGAGGGTCAGAATGATTCCATTTTCTGTCATCCTCAAATACAAAAAAAGATACCAAAAGTGGAGTCAGCTGAGCAGCACAGATGGCAAAATTTGGCATCTTCTTCCCCATACTCAGAGTCATTAGGAATGAATGATCCTATTCATAAGGATAGCCTTTTAACTGAAAAAGGGTACCTTATTGCTCAAACTGACTTAAGTGGATCTAGCTTTATAGCAAAGAATATTGAGGAAAGTCCTGTGAGATTAGAAAGGATGAAGATAACTGAAGAAAACAGTTCTTTTCCCAAGAAGGATAGCAAGGTTTATGAGGGGAAATCAACTGTCATTGATATGGGACAGGTGACTGAATTGCATGTTTTAGACTCCTTCACTGCTAATAACTTAAATGCTAAGATTGGTATGCAAAAGAATTGGGAACTACCTTCTGAGGAGATACATCCTTCATCATCATGCATGATGGGATTCTCTCTAAATAATCTTGTGGACAAGACGACGTCTAATCTTCATGAGATGAGCCAAAAGGCTAGTGATGTCAACAAATGTGCTATGGCTGAAGGTCTAAATGGTGAAAAAGGAAATGATTTTTCATTGACCAGAAATTTTGATTTAAATGCTCCAATAATAACATGTGAAGAAAGATTTTACGACAAAAGTTCTGCTAGAGATCATATATTCCAGCTGCCCATTGACCCAGATTCTTTTAAATCTGCACAAATTCAGCCTTCTCAGAATCAGACTGCTACAGGTTTTCATCATAATCCAACAGTGAGCTCTGAAAGTTTGTATCCTGTTGTACTTCGTGATGACTTCGGTCCAGGTTTTGACATGCCAGTGAATGGCCTGGATAATACAAGCAAGAATATTTCTTCTAAAAAGGAACCTTCTTTCTTTGATCACTTGGTTACCTGCACTGATAAAATGGTAGATCAGTTTATCCATGAACAATCGGCCCCTGGACAGTTAAAAGTTGAAGATATAATTTCGGGACAATCAAAAAATTTAGAAAGGTGTAATGATGCAAATCGAGTGGAGCCATTTGTCTTAGGAGAAGACATGACTGGTGTTGTTTCTCCATATAGTGAGTCTTCATCAGTACGCACCCCACATATTTTCGATGAAGTTGGAAGTGATGTATCTCCATCTCATACGGAAACAGAGAGCATCATCCCTGAGTCTGAACTTGAGGATTTTAAAGATGATCAGACAGACAAGAATGAATTCCTTTCTGATGCAATGATAGCAGAAATGGAAGCCAGCATATATGGTTTGCAGATAATAAGGAATGCTGATCTCGAAGATCTTATGGAGTTAGGGTCTGGTACTTATGGAACTGTTTATCATGGAAAGTGGCGGGGAACAGATGTTGCGATTAAGAGAATTAAAAAGAGCTGCTTTGCAGGGAGATCTTCTGAGCAAGAACGTTTGGCAAAAGATTTCTGGAGAGAGGCACAGATCCTCTCAAATCTTCACCATCCCAATGTGGTTGCATTTTATGGAATAGTACCAGATGGGGCTGGTGGAACCTTAGCAACTGTAACAGAGTATATGGTTAATGGGTCCCTTAGGCATGTCCTTGTCAAGAACCACAGATTACTAGATCGTCGTAAAAAGCTAATAATTGCGATGGATGCTGCTTTTGGTATGGAATATTTGCACTCAAAAAATATTGTCCATTTTGATTTGAAATGTGACAATTTGCTTGTCAATCTAAGGGATCCACAACGACCCATATGCAAGGTTGGAGATTTTGGATTATCAAGAATTAAACGCAATACCCTTGTATCGGGAGGTGTGCGAGGTACCCTTCCATGGATGGCACCAGAGCTGTTGAATGGTAATAGTAGCCGGGTTTCTGAAAAGGTTGATGTTTTCTCATTTGGCATCTCAATGTGGGAGTTACTGACAGGGGAGGAACCTTATGCAGATATGCATTGTGGTGCCATTATTGGGGGCATTGTAAAGAACACTCTTCGACCACCTGTTCCAGAACGCTGTGATCCTGAATGGAGGAAGCTTATGGAAGAGTGTTGGTCACCTGACCCCGAAAGTCGGCCATCATTCACAGAGATAACTAGCAGGTTACGATCTATGTCTATGGCATTTCAAGCTAAGGGGAATTATCAGGCATGGCAGTTAAGACCTGGTACTTCTTGA 3933 0.4045 MALNKTGIGTKTGKDPGLFPQYNQPELPSGVSNTRHNVHNNISMQAGEEFSVNFGHDGIAAARVPALPDICRNSENRFGLNRENGHVRYEDLTNILGLRRMDSESSSDIADFISIKLPAQEMENGASVNILSKIQKGDGDSGHALRKAVREPVGDQAGIGSAVPIPPLRRNESSLSNGFSGSGILDDSLSGKMKFLCSFGGKILPRPSDGKLRYVGGETHIISIQKDISWAELMKKTLGICSQPHTIKYQLPGEDLDALISVSSDEDLQNMIEEYYGLESHEGSQKLRIFLVPLGESEETSSTEASTVQQNDPDYQYVVALNGIVDLSPRKNIGGQSMTNEASQPGTSLNVAPVFQKTYPNASSPLETRDGINVLNPDGILNDSLNLQKPLPISPTPVQVAGSSTGYIQLLSNNSCQGSIESNKSFVTTQLHPENSSISTADCRYPNNVAVTLSSDSHPYRHGDVSQPQKLNRQYFDNYNPDKELITPVYVNSSDGYSDEVFGGRSLHKDRSFYAGNPLSCLDDPIRQQAESYGITDSSHAMPHAFSDSQLQESGARSGYSSQEGIGQSFSLNLEKAQLSSMLNFGVSQVNLLEGQNDSIFCHPQIQKKIPKVESAEQHRWQNLASSSPYSESLGMNDPIHKDSLLTEKGYLIAQTDLSGSSFIAKNIEESPVRLERMKITEENSSFPKKDSKVYEGKSTVIDMGQVTELHVLDSFTANNLNAKIGMQKNWELPSEEIHPSSSCMMGFSLNNLVDKTTSNLHEMSQKASDVNKCAMAEGLNGEKGNDFSLTRNFDLNAPIITCEERFYDKSSARDHIFQLPIDPDSFKSAQIQPSQNQTATGFHHNPTVSSESLYPVVLRDDFGPGFDMPVNGLDNTSKNISSKKEPSFFDHLVTCTDKMVDQFIHEQSAPGQLKVEDIISGQSKNLERCNDANRVEPFVLGEDMTGVVSPYSESSSVRTPHIFDEVGSDVSPSHTETESIIPESELEDFKDDQTDKNEFLSDAMIAEMEASIYGLQIIRNADLEDLMELGSGTYGTVYHGKWRGTDVAIKRIKKSCFAGRSSEQERLAKDFWREAQILSNLHHPNVVAFYGIVPDGAGGTLATVTEYMVNGSLRHVLVKNHRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDPQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPVPERCDPEWRKLMEECWSPDPESRPSFTEITSRLRSMSMAFQAKGNYQAWQLRPGTS. 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02023 1310 CDD STKc_MAP3K-like 1030 1287 - -
Seca1g02023 1310 Gene3D Transferase(Phosphotransferase) domain 1 1112 1306 - -
Seca1g02023 1310 PRINTS Tyrosine kinase catalytic domain signature 1214 1236 IPR001245 GO:0004672|GO:0006468
Seca1g02023 1310 PRINTS Tyrosine kinase catalytic domain signature 1106 1119 IPR001245 GO:0004672|GO:0006468
Seca1g02023 1310 PRINTS Tyrosine kinase catalytic domain signature 1258 1280 IPR001245 GO:0004672|GO:0006468
Seca1g02023 1310 PRINTS Tyrosine kinase catalytic domain signature 1143 1161 IPR001245 GO:0004672|GO:0006468
Seca1g02023 1310 ProSiteProfiles Protein kinase domain profile. 1024 1294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02023 1310 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 212 294 - -
Seca1g02023 1310 SMART serkin_6 1024 1293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g02023 1310 ProSitePatterns Protein kinases ATP-binding region signature. 1030 1055 IPR017441 GO:0005524
Seca1g02023 1310 CDD PB1_UP2 196 291 - -
Seca1g02023 1310 PANTHER SERINE-THREONINE PROTEIN KINASE 237 1290 - -
Seca1g02023 1310 Pfam Protein tyrosine and serine/threonine kinase 1028 1287 IPR001245 GO:0004672|GO:0006468
Seca1g02023 1310 Gene3D - 211 293 - -
Seca1g02023 1310 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1112 1303 - -
Seca1g02023 1310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1149 1161 IPR008271 GO:0004672|GO:0006468
Seca1g02023 1310 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1017 1111 - -
Seca1g02023 1310 Pfam PB1 domain 209 293 IPR000270 GO:0005515
Seca1g02023 1310 SUPERFAMILY Protein kinase-like (PK-like) 1013 1286 IPR011009 -
Seca1g02023 1310 Gene3D Phosphorylase Kinase; domain 1 1017 1111 - -
Seca1g02023 1310 MobiDBLite consensus disorder prediction 156 176 - -
Seca1g02023 1310 SUPERFAMILY CAD & PB1 domains 208 298 - -
Seca1g02023 1310 SMART PB1_new 207 294 IPR000270 GO:0005515
Seca1g02023 1310 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02023 Seca-Chr1 41561508 41571457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02023 189 332 MAP Kinase Kinase Kinase AT1G16270 59.722 5.38e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Seca1g02023 PK_Tyr_Ser-Thr 1.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02023 - - aprc:113862751 1902.1