Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g02017 ATGGAAGATGAGGATAAGGTAGTCAAAGTTGGAGAAAGCCAAGGAGAAGAAGGGGCATCAAGAATCTTTCCATGTCTATTCTGTTCAAGAAAGTTTTATAGTTCTCAAGCTTTAGGGGGACACCAAAATGCTCACAAGAAAGAGAGGACTGCTGCAAGGAAGGCTAAGAGGGCTTCTGAGTACTCATGTGTTTCCTTTGCTTCTCCACTGCCTACCCCTATGGTTCTTGCTCCAACCAATCAATTAGGTATTTTGAATCCTTCAATGTTCATCACAGCTCATGCAGCAAATCTCCCTTGTCTCTCAAGCCATCAAATTTCAGAAAAATTTGGATCAAGTGGTGCACCTAGATTTAGCAATGAGCTGCTTTATGGGGTAAGTTGTTCAAAAAGTCGATTTTGTGATGAAGATGGAAGAAGTTTCGTTAACTGGCAAGAGAGTATAAGATGTAATAACTTTGACAACAACGATACATCTCATGTCTCATTGACAAGTAACAATCAAAATCTTGGAATTCAGAAAAATGGTACAGAGAAACATCCAAAACTTGATTTGTCTCTTCATTTGTAG 570 0.3912 MEDEDKVVKVGESQGEEGASRIFPCLFCSRKFYSSQALGGHQNAHKKERTAARKAKRASEYSCVSFASPLPTPMVLAPTNQLGILNPSMFITAHAANLPCLSSHQISEKFGSSGAPRFSNELLYGVSCSKSRFCDEDGRSFVNWQESIRCNNFDNNDTSHVSLTSNNQNLGIQKNGTEKHPKLDLSLHL. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g02017 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Seca1g02017 189 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Seca1g02017 189 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 189 IPR044246 GO:0009788
Seca1g02017 189 Gene3D Classic Zinc Finger 3 68 - -
Seca1g02017 189 SUPERFAMILY beta-beta-alpha zinc fingers 21 50 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g02017 Seca-Chr1 41362914 41363483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g02017 21 54 C2H2 Transcription Factor Family AT5G14010 76.471 2.10e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g02017 - - gmx:100527084 241.506